Wall clock time and date at job start Mon Mar 30 2020 03:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46712 * 2 1 4 4 C 1.52999 * 109.47482 * 119.99353 * 2 1 3 5 5 C 1.50695 * 109.47532 * 185.00046 * 4 2 1 6 6 H 1.08000 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00462 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99713 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00377 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47273 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47704 * 120.00245 * 9 7 5 12 12 H 1.48502 * 109.47017 * 239.99799 * 9 7 5 13 13 N 1.46897 * 109.47369 * 239.99942 * 2 1 3 14 14 C 1.47965 * 111.00070 * 59.99638 * 13 2 1 15 15 C 1.53939 * 86.17880 * 137.58385 * 14 13 2 16 16 N 1.46904 * 113.73294 * 221.81416 * 15 14 13 17 17 C 1.46896 * 110.99949 * 178.10019 * 16 15 14 18 18 C 1.46894 * 111.00053 * 302.05757 * 16 15 14 19 19 C 1.47960 * 111.00044 * 159.35628 * 13 2 1 20 20 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47125 * 299.99830 * 1 2 3 22 22 H 1.08999 * 109.47356 * 60.00443 * 1 2 3 23 23 H 1.09003 * 109.46968 * 305.00851 * 4 2 1 24 24 H 1.09002 * 109.46419 * 65.00313 * 4 2 1 25 25 H 0.97002 * 120.00436 * 180.02562 * 8 7 5 26 26 H 1.08999 * 113.75581 * 23.26965 * 14 13 2 27 27 H 1.08997 * 113.85587 * 251.91499 * 14 13 2 28 28 H 1.09002 * 113.73278 * 90.63886 * 15 14 13 29 29 H 1.08997 * 109.47034 * 60.00283 * 17 16 15 30 30 H 1.09004 * 109.46970 * 180.02562 * 17 16 15 31 31 H 1.09004 * 109.47510 * 299.99914 * 17 16 15 32 32 H 1.09005 * 109.47714 * 59.99505 * 18 16 15 33 33 H 1.08998 * 109.47356 * 179.97438 * 18 16 15 34 34 H 1.09003 * 109.47212 * 299.99706 * 18 16 15 35 35 H 1.09001 * 113.75748 * 108.09640 * 19 13 2 36 36 H 1.09002 * 113.76361 * 336.73597 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1932 2.3578 8 7 3.5766 -1.8383 3.2991 9 14 6.0920 -1.0608 2.4368 10 1 6.5837 -0.2906 1.2662 11 1 6.4863 -0.3655 3.6884 12 1 6.6863 -2.4216 2.4184 13 7 2.0197 -0.6925 -1.1994 14 6 1.5452 -0.0216 -2.4299 15 6 2.9685 -0.2399 -2.9743 16 7 3.5050 0.9151 -3.7066 17 6 4.8788 0.6594 -4.1595 18 6 2.6362 1.2721 -4.8360 19 6 3.4152 -0.3052 -1.5026 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.6053 -0.2616 2.1370 24 1 1.7517 -1.7714 1.2056 25 1 4.0609 -2.2450 4.0346 26 1 1.2861 1.0273 -2.2861 27 1 0.7788 -0.5790 -2.9683 28 1 3.0930 -1.1794 -3.5127 29 1 4.8883 -0.2080 -4.8195 30 1 5.2518 1.5305 -4.6983 31 1 5.5159 0.4662 -3.2964 32 1 1.6428 1.5243 -4.4649 33 1 3.0563 2.1302 -5.3606 34 1 2.5644 0.4269 -5.5206 35 1 4.1430 -1.0907 -1.2990 36 1 3.7030 0.6608 -1.0877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179401.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:19 Heat of formation + Delta-G solvation = 37.539363 kcal Electronic energy + Delta-G solvation = -14852.900706 eV Core-core repulsion = 12566.215609 eV Total energy + Delta-G solvation = -2286.685097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75634 -36.17064 -33.36646 -31.76472 -28.04035 -27.41385 -26.38697 -24.78373 -23.37926 -22.32831 -19.27535 -19.14950 -16.29662 -15.77101 -15.52970 -14.84585 -14.42262 -14.16602 -13.43309 -13.23296 -12.98943 -12.35589 -12.15559 -11.80350 -11.62415 -11.58838 -11.48738 -11.27661 -11.08631 -10.77053 -10.45739 -10.39032 -10.07293 -9.91092 -9.04341 -8.81688 -8.29389 -8.22993 -7.96144 -5.91827 -3.91726 3.34498 3.42232 3.45131 4.04541 4.51860 4.67942 4.83907 5.22833 5.39752 5.40468 5.45712 5.59207 5.62557 5.71005 5.84336 5.92366 5.94344 5.98021 5.99385 6.07876 6.26243 6.43735 6.51432 6.65962 6.76083 6.95433 7.11337 7.25234 7.32874 7.61426 7.76317 8.07867 8.13236 8.50990 9.13015 9.70471 11.20108 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028617 B = 0.009820 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.192359 B = 2850.771520 C = 3698.405831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.035 0.965 4 C 0.032 3.968 5 C -0.514 4.514 6 H 0.064 0.936 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.461 5.461 14 C 0.008 3.992 15 C 0.034 3.966 16 N -0.538 5.538 17 C 0.026 3.974 18 C 0.026 3.974 19 C 0.048 3.952 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.038 0.962 23 H 0.018 0.982 24 H 0.025 0.975 25 H 0.258 0.742 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.086 0.914 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 4.865 -13.644 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.054 4.054 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.714 3.286 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.184 5.184 14 C -0.122 4.122 15 C -0.075 4.075 16 N -0.262 5.262 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.081 4.081 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.104 0.896 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.759 4.484 -13.007 13.870 hybrid contribution 1.192 0.178 -0.426 1.278 sum -0.568 4.662 -13.433 14.231 Atomic orbital electron populations 1.21852 0.96467 1.01568 1.00093 1.22308 0.93339 0.96080 0.93668 0.94658 1.19098 0.95741 0.95982 0.89699 1.21492 0.92288 1.33614 1.07880 0.91814 1.24991 0.97951 0.95611 0.95895 1.69981 1.35165 1.36379 1.12187 0.86639 0.86455 0.77660 0.77880 1.19725 1.21217 1.21177 1.68515 1.04011 1.45609 1.00314 1.23917 0.95435 0.98532 0.94282 1.23922 0.96437 0.91489 0.95646 1.62269 1.02394 1.37110 1.24459 1.22339 0.90241 0.99581 1.00112 1.22319 0.97986 0.99559 0.92404 1.23830 0.93249 1.01042 0.89975 0.92502 0.92768 0.94280 0.96422 0.95708 0.93265 0.91383 0.90707 0.91420 0.95915 0.91811 0.91032 0.91396 0.91850 0.96000 0.89554 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.09 37.16 0.34 -2.24 16 2 C 0.05 1.17 1.98 -67.72 -0.13 1.04 16 3 H 0.04 0.78 7.62 -51.93 -0.40 0.38 16 4 C 0.03 0.84 4.65 -27.89 -0.13 0.71 16 5 C -0.51 -14.38 8.17 -34.44 -0.28 -14.66 16 6 H 0.06 1.70 4.66 -52.49 -0.24 1.46 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.46 -9.24 5.98 -230.42 -1.38 -10.62 16 14 C 0.01 0.12 5.32 -2.76 -0.01 0.11 16 15 C 0.03 0.53 3.37 -69.40 -0.23 0.30 16 16 N -0.54 -7.57 4.98 -244.59 -1.22 -8.79 16 17 C 0.03 0.32 9.55 60.06 0.57 0.89 16 18 C 0.03 0.29 9.35 60.06 0.56 0.86 16 19 C 0.05 0.93 5.15 -2.77 -0.01 0.92 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.61 7.02 -51.93 -0.36 0.25 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 32 H 0.07 0.76 7.13 -51.93 -0.37 0.39 16 33 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 1.80 7.87 -51.93 -0.41 1.39 16 36 H 0.08 1.60 6.69 -51.93 -0.35 1.26 16 LS Contribution 283.39 15.07 4.27 4.27 Total: -1.00 -30.13 283.39 -8.34 -38.47 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.30 Total: -2.98 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 0.57 Total: -10.56 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.86 Total: -46.01 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.13 -8.34 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179401.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.010 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds