Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46982 * 2 1 4 4 C 1.50701 * 109.47119 * 120.00069 * 2 1 3 5 5 H 1.07997 * 120.00037 * 120.00645 * 4 2 1 6 6 C 1.37875 * 119.99758 * 300.00271 * 4 2 1 7 7 N 1.31513 * 120.00444 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99616 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47233 * 59.99874 * 8 6 4 10 10 H 1.48498 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46875 * 299.99790 * 8 6 4 12 12 N 1.46900 * 109.47216 * 240.00446 * 2 1 3 13 13 C 1.46898 * 110.99743 * 306.04082 * 12 2 1 14 14 C 1.46903 * 111.00334 * 69.99780 * 12 2 1 15 15 H 1.08995 * 110.28293 * 302.12584 * 14 12 2 16 16 C 1.54377 * 110.40656 * 64.31085 * 14 12 2 17 17 N 1.48567 * 104.59159 * 142.79384 * 16 14 12 18 18 C 1.48720 * 104.28820 * 320.57327 * 17 16 14 19 19 H 1.09004 * 110.38960 * 280.64066 * 18 17 16 20 20 C 1.53000 * 110.50734 * 158.14810 * 18 17 16 21 21 C 1.54257 * 110.32186 * 179.97438 * 14 12 2 22 22 H 1.09001 * 109.46313 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47220 * 299.99857 * 1 2 3 24 24 H 1.08998 * 109.47196 * 60.00196 * 1 2 3 25 25 H 0.96997 * 120.00232 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.47147 * 183.95739 * 13 12 2 27 27 H 1.09002 * 109.47560 * 303.95527 * 13 12 2 28 28 H 1.09003 * 109.47297 * 63.95864 * 13 12 2 29 29 H 1.08999 * 110.41555 * 261.57260 * 16 14 12 30 30 H 1.09001 * 110.41672 * 24.01603 * 16 14 12 31 31 H 1.00902 * 110.99892 * 200.96033 * 17 16 14 32 32 H 1.09004 * 109.46937 * 304.86081 * 20 18 17 33 33 H 1.08992 * 109.47157 * 64.86270 * 20 18 17 34 34 H 1.08998 * 109.46781 * 184.86260 * 20 18 17 35 35 H 1.09002 * 110.32715 * 359.89941 * 21 14 12 36 36 H 1.08998 * 110.32251 * 122.00467 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8279 -0.4194 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0354 -1.3078 14 6 1.7530 0.0974 -2.4091 15 1 0.6852 0.2951 -2.5034 16 6 2.5427 1.4233 -2.3713 17 7 2.9626 1.6491 -3.7784 18 6 3.3327 0.2961 -4.2726 19 1 4.3293 0.0242 -3.9247 20 6 3.2677 0.2472 -5.8004 21 6 2.2736 -0.6433 -3.6581 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7094 1.1617 3.4844 26 1 1.8666 -2.5520 -2.1648 27 1 1.6467 -2.5987 -0.3992 28 1 0.3556 -1.9521 -1.4400 29 1 1.9030 2.2372 -2.0302 30 1 3.4151 1.3279 -1.7249 31 1 3.7496 2.2789 -3.8242 32 1 2.2785 0.5627 -6.1322 33 1 4.0211 0.9152 -6.2177 34 1 3.4571 -0.7711 -6.1397 35 1 2.7287 -1.5920 -3.3735 36 1 1.4610 -0.8109 -4.3649 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -12.006505 kcal Electronic energy + Delta-G solvation = -15008.899386 eV Core-core repulsion = 12720.065820 eV Total energy + Delta-G solvation = -2288.833567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35579 -37.65805 -34.65515 -31.99966 -31.35037 -29.38532 -27.29904 -27.20486 -25.15902 -22.74754 -21.18125 -20.07708 -18.28562 -17.78594 -16.98871 -16.35652 -15.61213 -15.24191 -14.91788 -14.64099 -14.30307 -13.85006 -13.58410 -13.11597 -13.00842 -12.92185 -12.64885 -12.54280 -12.47305 -12.32494 -12.12924 -12.03298 -11.76555 -11.54340 -11.37629 -10.90106 -10.47717 -9.57242 -8.85812 -8.10076 -6.21098 1.42775 1.44148 1.51797 2.42891 3.13540 3.18827 3.57139 3.76882 3.86624 4.18829 4.32192 4.48762 4.61944 4.63654 4.70237 4.78849 4.84091 4.87178 4.93468 4.96605 5.05013 5.09066 5.14926 5.19375 5.27806 5.41126 5.51830 5.67530 5.78078 5.85576 6.21914 6.40691 6.51890 6.77184 6.92532 7.48136 8.95850 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051228 B = 0.007715 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.448791 B = 3628.595259 C = 3708.299062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.515 4.515 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.537 5.537 13 C 0.036 3.964 14 C 0.075 3.925 15 H 0.028 0.972 16 C 0.054 3.946 17 N -0.662 5.662 18 C 0.062 3.938 19 H 0.048 0.952 20 C -0.127 4.127 21 C -0.110 4.110 22 H 0.032 0.968 23 H 0.061 0.939 24 H 0.019 0.981 25 H 0.261 0.739 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.343 0.657 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.380 -2.318 -12.340 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.029 0.971 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.261 5.261 13 C -0.112 4.112 14 C -0.035 4.035 15 H 0.046 0.954 16 C -0.076 4.076 17 N -0.292 5.292 18 C -0.048 4.048 19 H 0.066 0.934 20 C -0.185 4.185 21 C -0.148 4.148 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.142 -2.201 -12.482 13.058 hybrid contribution -0.011 -0.139 1.696 1.702 sum 3.131 -2.341 -10.786 11.473 Atomic orbital electron populations 1.22197 1.00736 0.99113 0.99663 1.19041 0.89698 0.93226 0.87205 0.97146 1.21359 1.30564 1.12469 0.90959 0.92600 1.25694 0.95421 0.95820 1.01831 1.70008 1.37936 1.24205 1.24036 0.85602 0.78667 0.78692 0.78588 1.19869 1.21061 1.19630 1.62416 1.58712 1.03084 1.01924 1.22251 0.96293 0.90937 1.01709 1.22311 0.96653 0.93485 0.91023 0.95430 1.22683 0.98418 0.96528 0.89948 1.63727 1.39212 1.10256 1.15992 1.22528 0.96764 0.88596 0.96867 0.93374 1.21646 1.02404 1.02327 0.92087 1.22485 0.98754 0.98635 0.94887 0.94876 0.92065 0.96191 0.93001 0.90435 0.92600 0.96694 0.92082 0.94593 0.84162 0.92393 0.91902 0.90939 0.90204 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.23 71.98 0.59 -7.28 16 2 C 0.22 11.02 2.19 44.17 0.10 11.12 16 3 H 0.01 0.60 6.96 -2.39 -0.02 0.58 16 4 C -0.52 -28.53 7.91 25.60 0.20 -28.33 16 5 H 0.06 3.09 7.12 -2.91 -0.02 3.06 16 6 C 0.01 0.59 5.30 84.65 0.45 1.04 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.54 -23.02 4.51 -870.96 -3.92 -26.94 16 13 C 0.04 1.39 8.35 127.69 1.07 2.45 16 14 C 0.07 2.76 2.59 45.81 0.12 2.88 16 15 H 0.03 1.10 6.59 -2.39 -0.02 1.09 16 16 C 0.05 1.95 5.83 86.45 0.50 2.46 16 17 N -0.66 -18.94 7.29 -478.70 -3.49 -22.43 16 18 C 0.06 1.59 3.80 45.01 0.17 1.76 16 19 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 20 C -0.13 -2.47 9.48 71.98 0.68 -1.79 16 21 C -0.11 -3.17 5.68 31.47 0.18 -2.99 16 22 H 0.03 1.58 6.41 -2.39 -0.02 1.57 16 23 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 24 H 0.02 0.90 6.67 -2.39 -0.02 0.88 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.08 2.45 6.12 -2.39 -0.01 2.43 16 27 H 0.06 2.32 6.76 -2.39 -0.02 2.30 16 28 H 0.01 0.56 6.46 -2.39 -0.02 0.55 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.42 8.03 -2.39 -0.02 1.40 16 31 H 0.34 8.44 8.92 -89.69 -0.80 7.64 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 2.27 6.15 -2.39 -0.01 2.26 16 36 H 0.08 2.02 7.86 -2.39 -0.02 2.00 16 Total: -1.00 -59.76 272.49 -0.83 -60.58 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.26 Total: 14.74 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 4.06 Total: -18.67 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -7.17 Total: -102.64 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.76 -0.83 -60.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.577 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds