Wall clock time and date at job start Mon Mar 30 2020 02:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.50694 * 109.46750 * 239.99744 * 2 1 3 5 5 H 1.08008 * 120.00073 * 239.99832 * 4 2 1 6 6 C 1.37874 * 120.00153 * 60.00486 * 4 2 1 7 7 N 1.31515 * 120.00194 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47206 * 89.99972 * 8 6 4 10 10 H 1.48506 * 109.47147 * 209.99985 * 8 6 4 11 11 H 1.48501 * 109.47098 * 329.99416 * 8 6 4 12 12 N 1.46901 * 109.46678 * 119.99859 * 2 1 3 13 13 C 1.46895 * 111.00288 * 54.51949 * 12 2 1 14 14 C 1.46897 * 111.00492 * 290.55883 * 12 2 1 15 15 H 1.09004 * 110.64445 * 63.85609 * 14 12 2 16 16 C 1.54933 * 110.72745 * 187.00967 * 14 12 2 17 17 N 1.48534 * 103.22572 * 155.77351 * 16 14 12 18 18 C 1.47901 * 105.82190 * 320.79321 * 17 16 14 19 19 H 1.09003 * 109.91431 * 265.77795 * 18 17 16 20 20 C 1.52998 * 109.91709 * 144.68507 * 18 17 16 21 21 C 1.53989 * 107.05729 * 25.33247 * 18 17 16 22 22 H 1.09006 * 109.47382 * 54.46119 * 1 2 3 23 23 H 1.08999 * 109.47632 * 174.47010 * 1 2 3 24 24 H 1.09009 * 109.47268 * 294.46691 * 1 2 3 25 25 H 0.96998 * 120.00261 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47142 * 290.69476 * 13 12 2 27 27 H 1.09004 * 109.47357 * 50.68766 * 13 12 2 28 28 H 1.09001 * 109.47581 * 170.69542 * 13 12 2 29 29 H 1.08995 * 110.67059 * 37.33881 * 16 14 12 30 30 H 1.09004 * 110.66532 * 274.20495 * 16 14 12 31 31 H 1.00904 * 111.00284 * 81.30807 * 17 16 14 32 32 H 1.08999 * 109.47622 * 61.45249 * 20 18 17 33 33 H 1.09003 * 109.47134 * 301.45044 * 20 18 17 34 34 H 1.08998 * 109.46963 * 181.45458 * 20 18 17 35 35 H 1.08991 * 110.31367 * 117.69434 * 21 18 17 36 36 H 1.09007 * 110.30595 * 239.85991 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7118 12 7 2.0195 -0.6925 1.1995 13 6 1.4445 -2.0404 1.3008 14 6 1.7410 0.0911 2.4104 15 1 0.6666 0.1937 2.5630 16 6 2.4112 -0.5559 3.6484 17 7 2.5638 0.5850 4.5873 18 6 2.9528 1.7435 3.7542 19 1 4.0384 1.8398 3.7359 20 6 2.3258 3.0219 4.3141 21 6 2.4213 1.4772 2.3337 22 1 -0.3634 0.5974 -0.8363 23 1 -0.3634 -1.0228 -0.0990 24 1 -0.3634 0.4257 0.9354 25 1 0.7082 1.1608 -3.4844 26 1 0.3800 -1.9656 1.5227 27 1 1.5825 -2.5663 0.3560 28 1 1.9443 -2.5897 2.0987 29 1 3.3843 -0.9710 3.3862 30 1 1.7672 -1.3236 4.0773 31 1 1.7016 0.7664 5.0790 32 1 2.6937 3.1943 5.3256 33 1 1.2412 2.9157 4.3352 34 1 2.5958 3.8667 3.6804 35 1 1.6954 2.2399 2.0521 36 1 3.2447 1.4555 1.6197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:58 Heat of formation + Delta-G solvation = 3.488047 kcal Electronic energy + Delta-G solvation = -15051.681105 eV Core-core repulsion = 12763.519432 eV Total energy + Delta-G solvation = -2288.161673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02469 -36.15475 -32.69061 -30.77430 -29.14339 -28.35330 -25.28309 -24.79241 -24.37371 -21.01824 -20.40234 -18.38025 -16.22014 -15.80386 -15.40639 -14.83445 -14.33855 -13.63694 -13.38813 -13.08101 -12.84349 -12.41264 -11.95948 -11.81509 -11.43655 -11.33449 -11.09243 -11.03740 -10.81216 -10.65240 -10.47868 -10.29124 -10.14020 -10.03935 -9.68667 -8.90610 -8.40096 -8.34380 -7.15533 -6.00881 -4.03885 3.30701 3.37398 3.41772 4.38650 4.45416 4.99285 5.11497 5.17475 5.31374 5.33894 5.55627 5.64995 5.82034 5.92352 5.98227 6.12314 6.19373 6.23938 6.36433 6.41483 6.54807 6.65286 6.67715 6.81723 6.88095 7.00189 7.13417 7.50447 7.56329 7.68522 7.85301 8.15706 8.37586 8.61821 9.02310 9.60988 11.06632 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.008219 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.687002 B = 3405.931707 C = 3638.518570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.209 3.791 3 H 0.042 0.958 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.524 5.524 13 C 0.035 3.965 14 C 0.050 3.950 15 H 0.035 0.965 16 C 0.051 3.949 17 N -0.672 5.672 18 C 0.068 3.932 19 H 0.082 0.918 20 C -0.154 4.154 21 C -0.137 4.137 22 H 0.083 0.917 23 H 0.030 0.970 24 H 0.003 0.997 25 H 0.259 0.741 26 H 0.012 0.988 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.330 0.670 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 0.688 10.444 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.103 3.897 3 H 0.060 0.940 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.248 5.248 13 C -0.114 4.114 14 C -0.061 4.061 15 H 0.053 0.947 16 C -0.079 4.079 17 N -0.300 5.300 18 C -0.042 4.042 19 H 0.101 0.899 20 C -0.212 4.212 21 C -0.176 4.176 22 H 0.102 0.898 23 H 0.049 0.951 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.699 0.594 10.527 10.679 hybrid contribution -1.634 -0.089 -1.412 2.162 sum 0.065 0.505 9.114 9.129 Atomic orbital electron populations 1.22370 1.01026 1.00097 0.99150 1.19337 0.89563 0.94797 0.86033 0.94022 1.21125 1.30532 1.12448 0.89696 0.91969 1.24929 0.95267 0.95130 0.98991 1.69898 1.37164 1.23085 1.23342 0.86533 0.79258 0.79275 0.82552 1.20857 1.21319 1.19835 1.62440 1.58503 1.02036 1.01804 1.22215 0.95718 0.91792 1.01661 1.23113 0.96557 0.93808 0.92576 0.94694 1.23148 1.01181 0.93113 0.90468 1.62987 1.36474 1.04691 1.25835 1.22342 1.00345 0.90063 0.91453 0.89942 1.22066 1.00438 0.97592 1.01088 1.22841 1.01225 0.96397 0.97129 0.89785 0.95065 0.97771 0.93070 0.96993 0.90649 0.93800 0.89426 0.91751 0.85524 0.92383 0.92870 0.91904 0.91874 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.07 37.16 0.30 -3.78 16 2 C 0.21 5.22 2.13 -68.87 -0.15 5.07 16 3 H 0.04 1.14 6.61 -51.93 -0.34 0.79 16 4 C -0.50 -13.67 7.83 -34.44 -0.27 -13.94 16 5 H 0.06 1.71 7.13 -52.48 -0.37 1.34 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.52 11.38 55.43 0.63 -24.89 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.52 -11.20 4.54 -226.07 -1.03 -12.23 16 13 C 0.03 0.68 8.31 60.06 0.50 1.18 16 14 C 0.05 0.92 2.41 -65.85 -0.16 0.76 16 15 H 0.04 0.67 6.73 -51.93 -0.35 0.32 16 16 C 0.05 0.79 6.07 -1.90 -0.01 0.78 16 17 N -0.67 -9.50 7.40 -103.14 -0.76 -10.26 16 18 C 0.07 0.97 4.02 -66.65 -0.27 0.70 16 19 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.15 -1.81 8.94 37.16 0.33 -1.48 16 21 C -0.14 -2.37 4.94 -25.37 -0.13 -2.50 16 22 H 0.08 2.25 6.24 -51.93 -0.32 1.93 16 23 H 0.03 0.74 6.88 -51.93 -0.36 0.39 16 24 H 0.00 0.08 6.56 -51.92 -0.34 -0.26 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.01 0.23 6.91 -51.93 -0.36 -0.13 16 27 H 0.07 1.59 6.61 -51.93 -0.34 1.25 16 28 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.33 4.16 8.39 -39.29 -0.33 3.83 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.62 8.12 -51.93 -0.42 0.19 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 36 H 0.08 1.63 7.65 -51.92 -0.40 1.23 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -27.94 274.12 -7.96 -35.90 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.97 Total: 2.68 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -1.16 Total: -47.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.94 -7.96 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.390 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds