Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47306 * 2 1 4 4 C 1.50694 * 109.46750 * 239.99744 * 2 1 3 5 5 H 1.08008 * 120.00073 * 239.99832 * 4 2 1 6 6 C 1.37874 * 120.00153 * 60.00486 * 4 2 1 7 7 N 1.31515 * 120.00194 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99898 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47206 * 89.99972 * 8 6 4 10 10 H 1.48506 * 109.47147 * 209.99985 * 8 6 4 11 11 H 1.48501 * 109.47098 * 329.99416 * 8 6 4 12 12 N 1.46901 * 109.46678 * 119.99859 * 2 1 3 13 13 C 1.46895 * 111.00288 * 54.51949 * 12 2 1 14 14 C 1.46897 * 111.00492 * 290.55883 * 12 2 1 15 15 H 1.09004 * 110.64445 * 63.85609 * 14 12 2 16 16 C 1.54933 * 110.72745 * 187.00967 * 14 12 2 17 17 N 1.48534 * 103.22572 * 155.77351 * 16 14 12 18 18 C 1.47901 * 105.82190 * 320.79321 * 17 16 14 19 19 H 1.09003 * 109.91431 * 265.77795 * 18 17 16 20 20 C 1.52998 * 109.91709 * 144.68507 * 18 17 16 21 21 C 1.53989 * 107.05729 * 25.33247 * 18 17 16 22 22 H 1.09006 * 109.47382 * 54.46119 * 1 2 3 23 23 H 1.08999 * 109.47632 * 174.47010 * 1 2 3 24 24 H 1.09009 * 109.47268 * 294.46691 * 1 2 3 25 25 H 0.96998 * 120.00261 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.47142 * 290.69476 * 13 12 2 27 27 H 1.09004 * 109.47357 * 50.68766 * 13 12 2 28 28 H 1.09001 * 109.47581 * 170.69542 * 13 12 2 29 29 H 1.08995 * 110.67059 * 37.33881 * 16 14 12 30 30 H 1.09004 * 110.66532 * 274.20495 * 16 14 12 31 31 H 1.00904 * 111.00284 * 81.30807 * 17 16 14 32 32 H 1.08999 * 109.47622 * 61.45249 * 20 18 17 33 33 H 1.09003 * 109.47134 * 301.45044 * 20 18 17 34 34 H 1.08998 * 109.46963 * 181.45458 * 20 18 17 35 35 H 1.08991 * 110.31367 * 117.69434 * 21 18 17 36 36 H 1.09007 * 110.30595 * 239.85991 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7118 12 7 2.0195 -0.6925 1.1995 13 6 1.4445 -2.0404 1.3008 14 6 1.7410 0.0911 2.4104 15 1 0.6666 0.1937 2.5630 16 6 2.4112 -0.5559 3.6484 17 7 2.5638 0.5850 4.5873 18 6 2.9528 1.7435 3.7542 19 1 4.0384 1.8398 3.7359 20 6 2.3258 3.0219 4.3141 21 6 2.4213 1.4772 2.3337 22 1 -0.3634 0.5974 -0.8363 23 1 -0.3634 -1.0228 -0.0990 24 1 -0.3634 0.4257 0.9354 25 1 0.7082 1.1608 -3.4844 26 1 0.3800 -1.9656 1.5227 27 1 1.5825 -2.5663 0.3560 28 1 1.9443 -2.5897 2.0987 29 1 3.3843 -0.9710 3.3862 30 1 1.7672 -1.3236 4.0773 31 1 1.7016 0.7664 5.0790 32 1 2.6937 3.1943 5.3256 33 1 1.2412 2.9157 4.3352 34 1 2.5958 3.8667 3.6804 35 1 1.6954 2.2399 2.0521 36 1 3.2447 1.4555 1.6197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -16.405446 kcal Electronic energy + Delta-G solvation = -15052.543751 eV Core-core repulsion = 12763.519432 eV Total energy + Delta-G solvation = -2289.024319 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44428 -37.77068 -34.66157 -32.06446 -30.73340 -29.97160 -27.33106 -26.08156 -26.00033 -22.64233 -21.73610 -20.01792 -18.24787 -17.20339 -16.94864 -16.57874 -15.84028 -15.08609 -14.92474 -14.59408 -14.45176 -14.01810 -13.51456 -13.12695 -13.02777 -12.96991 -12.69130 -12.64384 -12.49541 -12.31899 -12.21331 -12.08981 -11.61344 -11.54937 -11.40363 -10.92273 -10.49789 -9.59667 -8.86810 -8.11816 -6.21972 1.41007 1.42144 1.52801 2.42018 3.16426 3.18064 3.47903 3.80131 3.97096 4.11681 4.37746 4.38882 4.53020 4.58562 4.66184 4.74296 4.77943 4.82956 4.88420 4.96299 5.09986 5.14817 5.15625 5.20801 5.22733 5.34777 5.53065 5.69002 5.73984 5.81638 6.21652 6.48153 6.49312 6.77199 6.92010 7.47161 8.94597 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044740 B = 0.008219 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.687002 B = 3405.931707 C = 3638.518570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.216 3.784 3 H 0.012 0.988 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.534 5.534 13 C 0.039 3.961 14 C 0.047 3.953 15 H 0.030 0.970 16 C 0.062 3.938 17 N -0.665 5.665 18 C 0.074 3.926 19 H 0.081 0.919 20 C -0.148 4.148 21 C -0.135 4.135 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.020 0.980 25 H 0.260 0.740 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.342 0.658 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 0.136 11.720 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.108 3.892 3 H 0.030 0.970 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.258 5.258 13 C -0.110 4.110 14 C -0.063 4.063 15 H 0.048 0.952 16 C -0.068 4.068 17 N -0.293 5.293 18 C -0.036 4.036 19 H 0.099 0.901 20 C -0.205 4.205 21 C -0.175 4.175 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.865 0.036 11.829 11.975 hybrid contribution -1.681 0.098 -1.769 2.442 sum 0.185 0.134 10.059 10.062 Atomic orbital electron populations 1.22159 1.00701 0.99427 0.98805 1.19058 0.89594 0.93314 0.87191 0.97048 1.21405 1.30567 1.12417 0.91033 0.92628 1.25690 0.95449 0.95812 1.01829 1.70024 1.38000 1.24204 1.23940 0.85551 0.78818 0.78244 0.78977 1.20147 1.20992 1.19456 1.62345 1.58749 1.02896 1.01833 1.22203 0.96197 0.90842 1.01716 1.23235 0.96578 0.94212 0.92325 0.95184 1.23029 1.00624 0.93844 0.89302 1.62955 1.37244 1.04087 1.25053 1.22285 1.00376 0.91412 0.89509 0.90054 1.22010 1.00464 0.96128 1.01942 1.22810 0.99979 0.96003 0.98674 0.92469 0.95218 0.96123 0.93048 0.96720 0.92652 0.90720 0.90411 0.89772 0.84126 0.90567 0.92551 0.91641 0.92747 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 8.07 71.98 0.58 -6.89 16 2 C 0.22 10.98 2.13 44.17 0.09 11.07 16 3 H 0.01 0.66 6.61 -2.39 -0.02 0.64 16 4 C -0.52 -28.64 7.83 25.60 0.20 -28.44 16 5 H 0.06 3.09 7.13 -2.91 -0.02 3.07 16 6 C 0.01 0.59 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.40 11.38 21.45 0.24 -53.16 16 8 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.53 -22.76 4.54 -869.16 -3.95 -26.71 16 13 C 0.04 1.47 8.31 127.69 1.06 2.54 16 14 C 0.05 1.67 2.41 46.12 0.11 1.78 16 15 H 0.03 1.11 6.73 -2.38 -0.02 1.10 16 16 C 0.06 1.79 6.07 86.65 0.53 2.32 16 17 N -0.67 -17.02 7.40 -480.21 -3.55 -20.58 16 18 C 0.07 2.00 4.02 45.06 0.18 2.18 16 19 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 20 C -0.15 -3.14 8.94 71.98 0.64 -2.50 16 21 C -0.14 -4.69 4.94 31.47 0.16 -4.53 16 22 H 0.06 3.12 6.24 -2.38 -0.01 3.11 16 23 H 0.03 1.42 6.88 -2.39 -0.02 1.40 16 24 H 0.02 0.90 6.56 -2.38 -0.02 0.89 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.01 0.54 6.91 -2.39 -0.02 0.52 16 27 H 0.05 2.32 6.61 -2.38 -0.02 2.30 16 28 H 0.07 2.36 7.41 -2.39 -0.02 2.34 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.12 8.11 -2.38 -0.02 2.10 16 31 H 0.34 7.52 8.39 -89.69 -0.75 6.77 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.93 7.68 -2.39 -0.02 1.92 16 36 H 0.05 2.22 7.65 -2.38 -0.02 2.20 16 Total: -1.00 -59.62 274.12 -0.93 -60.56 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.30 Total: 15.19 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 4.00 Total: -21.43 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -7.26 Total: -100.44 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.62 -0.93 -60.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.150 kcal (2) G-P(sol) polarization free energy of solvation -59.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds