Wall clock time and date at job start Mon Mar 30 2020 02:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.50698 * 109.46843 * 119.99366 * 2 1 3 5 5 H 1.08006 * 119.99312 * 120.00336 * 4 2 1 6 6 C 1.37870 * 120.00688 * 300.00372 * 4 2 1 7 7 N 1.31516 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00277 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47016 * 90.00088 * 8 6 4 10 10 H 1.48503 * 109.46969 * 209.99735 * 8 6 4 11 11 H 1.48498 * 109.47399 * 329.99806 * 8 6 4 12 12 N 1.46897 * 109.47269 * 239.99933 * 2 1 3 13 13 C 1.46905 * 110.99832 * 296.41621 * 12 2 1 14 14 C 1.46896 * 110.99731 * 172.46368 * 12 2 1 15 15 H 1.09001 * 110.76852 * 59.68882 * 14 12 2 16 16 C 1.54315 * 110.70535 * 296.47908 * 14 12 2 17 17 N 1.47447 * 107.23275 * 219.33457 * 16 14 12 18 18 C 1.47843 * 108.56661 * 359.01635 * 17 16 14 19 19 H 1.09001 * 110.37213 * 265.26296 * 18 17 16 20 20 C 1.52999 * 110.37115 * 143.03731 * 18 17 16 21 21 C 1.54899 * 104.79754 * 24.09067 * 18 17 16 22 22 H 1.09005 * 109.47290 * 186.53373 * 1 2 3 23 23 H 1.08996 * 109.47404 * 306.53505 * 1 2 3 24 24 H 1.09004 * 109.47451 * 66.53683 * 1 2 3 25 25 H 0.97002 * 120.00429 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47060 * 296.04923 * 13 12 2 27 27 H 1.08997 * 109.47135 * 56.04717 * 13 12 2 28 28 H 1.09000 * 109.47111 * 176.04543 * 13 12 2 29 29 H 1.09004 * 109.88806 * 99.93637 * 16 14 12 30 30 H 1.08996 * 109.89213 * 338.74687 * 16 14 12 31 31 H 1.00900 * 110.99921 * 236.74149 * 17 16 14 32 32 H 1.08992 * 109.47566 * 61.45235 * 20 18 17 33 33 H 1.09003 * 109.47011 * 181.45103 * 20 18 17 34 34 H 1.08993 * 109.47223 * 301.44722 * 20 18 17 35 35 H 1.08999 * 110.98782 * 81.02802 * 21 18 17 36 36 H 1.08996 * 110.99297 * 204.79983 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6304 -0.5437 4.4119 10 1 1.3443 -0.9487 5.1123 11 1 2.4880 -2.5652 3.7124 12 7 2.0197 -0.6925 -1.1994 13 6 1.6199 -2.1061 -1.1912 14 6 3.4770 -0.5582 -1.3266 15 1 3.9814 -0.9813 -0.4579 16 6 3.8737 0.9202 -1.5217 17 7 4.9672 0.9522 -2.5103 18 6 5.2776 -0.4357 -2.9141 19 1 6.0999 -0.8298 -2.3168 20 6 5.6272 -0.4919 -4.4025 21 6 3.9778 -1.2297 -2.6325 22 1 -0.3634 -1.0210 0.1169 23 1 -0.3634 0.6117 0.8257 24 1 -0.3634 0.4092 -0.9427 25 1 0.7088 1.1616 3.4843 26 1 2.0924 -2.6124 -0.3495 27 1 0.5364 -2.1767 -1.0960 28 1 1.9344 -2.5780 -2.1221 29 1 4.2165 1.3401 -0.5760 30 1 3.0205 1.4871 -1.8940 31 1 5.7831 1.4100 -2.1323 32 1 6.5116 0.1164 -4.5913 33 1 5.8280 -1.5240 -4.6899 34 1 4.7909 -0.1083 -4.9868 35 1 3.2575 -1.0986 -3.4400 36 1 4.1926 -2.2861 -2.4714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400555.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:00 Heat of formation + Delta-G solvation = 2.378467 kcal Electronic energy + Delta-G solvation = -15081.402205 eV Core-core repulsion = 12793.192418 eV Total energy + Delta-G solvation = -2288.209788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.75708 -36.00707 -32.60501 -30.75063 -29.73826 -27.67722 -25.91397 -25.07566 -23.61190 -20.51511 -19.84995 -18.85130 -16.54566 -16.14180 -15.40072 -14.74064 -13.83791 -13.51327 -13.27827 -12.93463 -12.75226 -12.24931 -11.89476 -11.79261 -11.41899 -11.39394 -11.09292 -10.91034 -10.74950 -10.61089 -10.46367 -10.35347 -10.03361 -9.85783 -9.59840 -9.14476 -8.41011 -8.08626 -7.13910 -6.00623 -4.12848 3.23903 3.31617 3.34082 4.37698 4.51092 4.96079 5.16557 5.22119 5.26702 5.49803 5.72643 5.80736 5.86281 6.05172 6.16066 6.20426 6.25639 6.33639 6.45374 6.53771 6.66084 6.76078 6.80458 6.97398 7.07341 7.22210 7.28705 7.58060 7.70541 7.73563 7.96679 8.16460 8.33365 8.44730 8.97051 9.54520 11.00057 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037404 B = 0.008957 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.404956 B = 3125.253435 C = 3301.718054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.204 3.796 3 H 0.041 0.959 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.530 5.530 13 C 0.035 3.965 14 C 0.075 3.925 15 H 0.048 0.952 16 C 0.060 3.940 17 N -0.681 5.681 18 C 0.069 3.931 19 H 0.044 0.956 20 C -0.131 4.131 21 C -0.118 4.118 22 H 0.027 0.973 23 H 0.079 0.921 24 H 0.015 0.985 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.331 0.669 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -2.668 -8.221 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.059 0.941 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.255 5.255 13 C -0.114 4.114 14 C -0.036 4.036 15 H 0.066 0.934 16 C -0.069 4.069 17 N -0.310 5.310 18 C -0.041 4.041 19 H 0.062 0.938 20 C -0.189 4.189 21 C -0.156 4.156 22 H 0.046 0.954 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.394 -2.164 -9.046 10.752 hybrid contribution 1.168 -1.222 2.644 3.138 sum 6.561 -3.385 -6.402 9.772 Atomic orbital electron populations 1.21759 0.97726 0.99846 0.99217 1.19306 0.92348 0.94282 0.84321 0.94131 1.21694 1.31849 1.12834 0.91788 0.92768 1.24897 0.94855 0.94841 0.98798 1.69896 1.36388 1.22706 1.23424 0.86699 0.78664 0.80095 0.83161 1.20783 1.21099 1.20107 1.62621 1.08781 1.12222 1.41827 1.22158 1.00806 0.89991 0.98431 1.22594 0.90726 0.94871 0.95387 0.93371 1.22547 0.94373 0.96851 0.93109 1.61864 1.10843 1.16328 1.41956 1.22311 0.96716 0.89028 0.96033 0.93773 1.21671 1.01437 1.00465 0.95365 1.22825 0.96065 0.97949 0.98801 0.95400 0.90241 0.96573 0.92912 0.95413 0.92094 0.94082 0.93165 0.89944 0.85421 0.93150 0.92965 0.92058 0.90185 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.56 37.16 0.32 -2.79 16 2 C 0.20 5.06 2.19 -68.87 -0.15 4.91 16 3 H 0.04 1.10 6.92 -51.93 -0.36 0.74 16 4 C -0.54 -14.53 7.12 -34.44 -0.25 -14.78 16 5 H 0.05 1.47 5.86 -52.48 -0.31 1.16 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.89 -24.99 11.40 55.43 0.63 -24.36 16 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.53 -11.41 4.55 -226.12 -1.03 -12.44 16 13 C 0.03 0.70 8.66 60.07 0.52 1.22 16 14 C 0.07 1.45 2.38 -65.89 -0.16 1.30 16 15 H 0.05 1.05 7.06 -51.93 -0.37 0.68 16 16 C 0.06 1.12 6.07 -2.84 -0.02 1.10 16 17 N -0.68 -10.63 7.05 -103.85 -0.73 -11.36 16 18 C 0.07 0.99 3.89 -66.19 -0.26 0.74 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.13 -1.59 9.59 37.16 0.36 -1.23 16 21 C -0.12 -1.90 4.73 -24.60 -0.12 -2.02 16 22 H 0.03 0.66 6.73 -51.93 -0.35 0.31 16 23 H 0.08 2.11 6.27 -51.93 -0.33 1.78 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 27 H 0.06 1.22 6.35 -51.93 -0.33 0.89 16 28 H 0.04 0.71 7.07 -51.93 -0.37 0.34 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.67 7.84 -51.93 -0.41 1.26 16 31 H 0.33 4.56 8.91 -39.29 -0.35 4.21 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 36 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -27.58 275.07 -7.85 -35.43 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.00 Total: 2.20 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 0.16 Total: -9.77 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -1.13 Total: -48.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.58 -7.85 -35.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400555.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.810 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds