Wall clock time and date at job start Mon Mar 30 2020 03:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47339 * 2 1 4 4 C 1.50699 * 109.47170 * 239.99535 * 2 1 3 5 5 H 1.08000 * 119.99545 * 240.00276 * 4 2 1 6 6 C 1.37874 * 120.00172 * 60.00403 * 4 2 1 7 7 N 1.31515 * 119.99918 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00215 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47052 * 59.99491 * 8 6 4 10 10 H 1.48490 * 109.47372 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46703 * 299.99724 * 8 6 4 12 12 N 1.46902 * 109.46632 * 119.99292 * 2 1 3 13 13 C 1.44305 * 110.99763 * 183.64850 * 12 2 1 14 14 C 1.53982 * 108.31340 * 221.34908 * 13 12 2 15 15 C 1.45870 * 112.66901 * 278.59652 * 14 13 12 16 16 C 1.54527 * 111.67230 * 61.49868 * 15 14 13 17 17 H 1.08996 * 109.57029 * 42.58310 * 16 15 14 18 18 N 1.46899 * 109.57202 * 162.83262 * 16 15 14 19 19 C 1.50539 * 108.96336 * 282.70690 * 16 15 14 20 20 C 1.47940 * 111.00305 * 311.05916 * 12 2 1 21 21 H 1.08998 * 109.46752 * 65.60228 * 1 2 3 22 22 H 1.09001 * 109.47246 * 185.59752 * 1 2 3 23 23 H 1.09002 * 109.47066 * 305.60249 * 1 2 3 24 24 H 0.97001 * 120.00074 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.68945 * 101.64298 * 13 12 2 26 26 H 1.09001 * 109.73087 * 341.07575 * 13 12 2 27 27 H 1.09000 * 108.83968 * 157.77562 * 14 13 12 28 28 H 1.08993 * 108.84060 * 39.41873 * 14 13 12 29 29 H 1.09004 * 109.04317 * 300.93104 * 15 14 13 30 30 H 1.09005 * 109.04006 * 182.05917 * 15 14 13 31 31 H 1.00902 * 111.00288 * 299.74870 * 18 16 15 32 32 H 1.00903 * 111.00298 * 63.70815 * 18 16 15 33 33 H 1.08995 * 108.79169 * 212.70758 * 19 16 15 34 34 H 1.09005 * 108.78999 * 330.91684 * 19 16 15 35 35 H 1.08997 * 108.71065 * 313.18434 * 20 12 2 36 36 H 1.09000 * 108.70701 * 71.32110 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8262 -0.4210 -5.2203 11 1 3.8065 -1.1212 -4.0079 12 7 2.0196 -0.6924 1.1996 13 6 3.4596 -0.6379 1.2766 14 6 3.9717 -2.0140 1.7403 15 6 3.8866 -2.1876 3.1861 16 6 2.4271 -2.1009 3.6863 17 1 1.7755 -2.6526 3.0087 18 7 2.3341 -2.6754 5.0351 19 6 2.0079 -0.6555 3.7238 20 6 1.3410 -0.1915 2.4150 21 1 -0.3633 0.4245 -0.9359 22 1 -0.3634 -1.0228 0.1002 23 1 -0.3633 0.5983 0.8356 24 1 0.7090 1.1611 -3.4845 25 1 3.7603 0.1266 1.9931 26 1 3.8720 -0.4040 0.2951 27 1 5.0117 -2.1243 1.4331 28 1 3.3797 -2.7910 1.2569 29 1 4.4761 -1.4107 3.6730 30 1 4.2962 -3.1621 3.4520 31 1 2.6147 -3.6446 5.0355 32 1 2.8798 -2.1407 5.6943 33 1 1.3085 -0.5140 4.5477 34 1 2.8886 -0.0391 3.9043 35 1 1.3391 0.8982 2.3904 36 1 0.3091 -0.5424 2.4090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:13 Heat of formation + Delta-G solvation = -4.452591 kcal Electronic energy + Delta-G solvation = -15141.278631 eV Core-core repulsion = 12852.772627 eV Total energy + Delta-G solvation = -2288.506004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.82339 -35.65590 -32.92766 -32.25963 -30.12517 -28.37772 -25.49557 -24.43164 -23.47886 -20.61629 -20.02613 -18.66679 -16.35110 -15.73720 -15.52124 -14.55797 -14.43740 -14.12386 -13.68288 -13.13103 -12.83110 -12.54255 -12.31580 -11.67972 -11.14965 -10.96544 -10.78404 -10.73712 -10.62663 -10.47625 -10.28741 -10.18373 -10.06312 -9.88775 -9.53090 -8.89383 -8.49362 -8.37371 -6.98966 -5.97377 -4.01991 3.33645 3.38078 3.41019 4.42680 4.71977 4.94671 5.02191 5.25800 5.33377 5.59504 5.64703 5.76204 5.86950 6.00209 6.20953 6.30401 6.38486 6.42590 6.44857 6.59579 6.70504 6.80278 6.85041 6.95776 7.10204 7.17737 7.32995 7.55200 7.58367 7.83459 7.89264 8.36947 8.43907 8.67428 9.06057 9.62903 11.08715 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044401 B = 0.008813 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.466000 B = 3176.463223 C = 3566.978941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.217 3.783 3 H -0.004 1.004 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.072 3.928 14 C -0.113 4.113 15 C -0.139 4.139 16 C 0.097 3.903 17 H 0.093 0.907 18 N -0.847 5.847 19 C -0.112 4.112 20 C 0.067 3.933 21 H 0.086 0.914 22 H 0.033 0.967 23 H 0.007 0.993 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.336 0.664 32 H 0.332 0.668 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -3.735 10.419 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.111 3.889 3 H 0.014 0.986 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.268 5.268 13 C -0.057 4.057 14 C -0.152 4.152 15 C -0.178 4.178 16 C -0.014 4.014 17 H 0.112 0.888 18 N -0.374 5.374 19 C -0.150 4.150 20 C -0.062 4.062 21 H 0.105 0.895 22 H 0.052 0.948 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.087 -3.916 10.184 11.340 hybrid contribution 1.605 0.301 -0.875 1.852 sum 4.692 -3.615 9.309 11.034 Atomic orbital electron populations 1.21885 0.97979 0.98747 1.00882 1.19262 0.92156 0.91712 0.85767 0.98641 1.21116 1.30723 1.12165 0.89670 0.91977 1.24933 0.95337 0.95121 0.98967 1.69881 1.37004 1.23119 1.23438 0.86598 0.79034 0.79784 0.82197 1.20268 1.21422 1.20408 1.60867 1.04570 1.59042 1.02331 1.21614 0.89433 0.94101 1.00537 1.20434 0.99851 1.00032 0.94880 1.21366 0.97920 1.00165 0.98354 1.21231 0.95002 0.96080 0.89046 0.88842 1.59138 1.63470 1.06665 1.08144 1.21446 1.00344 0.95222 0.98023 1.22277 0.98529 0.96281 0.89091 0.89519 0.94824 0.97389 0.92983 0.96245 0.90109 0.93450 0.91073 0.93349 0.93407 0.85202 0.85691 0.91262 0.93372 0.96080 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.24 37.16 0.31 -3.08 16 2 C 0.22 5.49 1.96 -68.86 -0.14 5.36 16 3 H 0.00 -0.11 8.13 -51.93 -0.42 -0.53 16 4 C -0.50 -13.61 7.51 -34.44 -0.26 -13.87 16 5 H 0.06 1.69 7.47 -52.49 -0.39 1.30 16 6 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 7 N -0.89 -25.64 11.29 55.43 0.63 -25.01 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.54 -11.58 3.88 -227.96 -0.89 -12.47 16 13 C 0.07 1.42 4.97 -4.70 -0.02 1.39 16 14 C -0.11 -1.88 5.37 -29.59 -0.16 -2.04 16 15 C -0.14 -1.94 4.96 -29.30 -0.15 -2.08 16 16 C 0.10 1.41 2.94 -68.14 -0.20 1.21 16 17 H 0.09 1.60 7.79 -51.93 -0.40 1.19 16 18 N -0.85 -10.19 9.14 -5.03 -0.05 -10.23 16 19 C -0.11 -1.72 4.94 -27.41 -0.14 -1.85 16 20 C 0.07 1.24 4.30 -2.70 -0.01 1.23 16 21 H 0.09 2.35 5.94 -51.93 -0.31 2.04 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.01 0.16 6.90 -51.93 -0.36 -0.20 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.36 6.80 -51.93 -0.35 0.01 16 26 H 0.08 1.77 6.57 -51.93 -0.34 1.43 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.05 0.65 7.59 -51.93 -0.39 0.26 16 30 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.34 3.54 8.99 -39.29 -0.35 3.18 16 32 H 0.33 3.49 8.98 -39.29 -0.35 3.14 16 33 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 34 H 0.05 0.72 6.67 -51.93 -0.35 0.37 16 35 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 36 H 0.07 1.27 7.04 -51.93 -0.37 0.90 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -27.91 271.26 -8.14 -36.05 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.04 Total: 3.43 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.86 Total: -12.24 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.31 Total: -47.71 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.91 -8.14 -36.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.594 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds