Wall clock time and date at job start Mon Mar 30 2020 03:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47339 * 2 1 4 4 C 1.50699 * 109.47170 * 239.99535 * 2 1 3 5 5 H 1.08000 * 119.99545 * 240.00276 * 4 2 1 6 6 C 1.37874 * 120.00172 * 60.00403 * 4 2 1 7 7 N 1.31515 * 119.99918 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00215 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47052 * 59.99491 * 8 6 4 10 10 H 1.48490 * 109.47372 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46703 * 299.99724 * 8 6 4 12 12 N 1.46902 * 109.46632 * 119.99292 * 2 1 3 13 13 C 1.44305 * 110.99763 * 183.64850 * 12 2 1 14 14 C 1.53982 * 108.31340 * 221.34908 * 13 12 2 15 15 C 1.45870 * 112.66901 * 278.59652 * 14 13 12 16 16 C 1.54527 * 111.67230 * 61.49868 * 15 14 13 17 17 H 1.08996 * 109.57029 * 42.58310 * 16 15 14 18 18 N 1.46899 * 109.57202 * 162.83262 * 16 15 14 19 19 C 1.50539 * 108.96336 * 282.70690 * 16 15 14 20 20 C 1.47940 * 111.00305 * 311.05916 * 12 2 1 21 21 H 1.08998 * 109.46752 * 65.60228 * 1 2 3 22 22 H 1.09001 * 109.47246 * 185.59752 * 1 2 3 23 23 H 1.09002 * 109.47066 * 305.60249 * 1 2 3 24 24 H 0.97001 * 120.00074 * 179.97438 * 7 6 4 25 25 H 1.09004 * 109.68945 * 101.64298 * 13 12 2 26 26 H 1.09001 * 109.73087 * 341.07575 * 13 12 2 27 27 H 1.09000 * 108.83968 * 157.77562 * 14 13 12 28 28 H 1.08993 * 108.84060 * 39.41873 * 14 13 12 29 29 H 1.09004 * 109.04317 * 300.93104 * 15 14 13 30 30 H 1.09005 * 109.04006 * 182.05917 * 15 14 13 31 31 H 1.00902 * 111.00288 * 299.74870 * 18 16 15 32 32 H 1.00903 * 111.00298 * 63.70815 * 18 16 15 33 33 H 1.08995 * 108.79169 * 212.70758 * 19 16 15 34 34 H 1.09005 * 108.78999 * 330.91684 * 19 16 15 35 35 H 1.08997 * 108.71065 * 313.18434 * 20 12 2 36 36 H 1.09000 * 108.70701 * 71.32110 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8262 -0.4210 -5.2203 11 1 3.8065 -1.1212 -4.0079 12 7 2.0196 -0.6924 1.1996 13 6 3.4596 -0.6379 1.2766 14 6 3.9717 -2.0140 1.7403 15 6 3.8866 -2.1876 3.1861 16 6 2.4271 -2.1009 3.6863 17 1 1.7755 -2.6526 3.0087 18 7 2.3341 -2.6754 5.0351 19 6 2.0079 -0.6555 3.7238 20 6 1.3410 -0.1915 2.4150 21 1 -0.3633 0.4245 -0.9359 22 1 -0.3634 -1.0228 0.1002 23 1 -0.3633 0.5983 0.8356 24 1 0.7090 1.1611 -3.4845 25 1 3.7603 0.1266 1.9931 26 1 3.8720 -0.4040 0.2951 27 1 5.0117 -2.1243 1.4331 28 1 3.3797 -2.7910 1.2569 29 1 4.4761 -1.4107 3.6730 30 1 4.2962 -3.1621 3.4520 31 1 2.6147 -3.6446 5.0355 32 1 2.8798 -2.1407 5.6943 33 1 1.3085 -0.5140 4.5477 34 1 2.8886 -0.0391 3.9043 35 1 1.3391 0.8982 2.3904 36 1 0.3091 -0.5424 2.4090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:13 Heat of formation + Delta-G solvation = -23.926050 kcal Electronic energy + Delta-G solvation = -15142.123064 eV Core-core repulsion = 12852.772627 eV Total energy + Delta-G solvation = -2289.350437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.27282 -37.21708 -34.72255 -33.73796 -31.69135 -30.00109 -27.46449 -25.94305 -24.98780 -22.39196 -21.30132 -20.25160 -18.37255 -17.28918 -16.88528 -16.27350 -15.78067 -15.64712 -15.16453 -14.74576 -14.24803 -14.15803 -13.86127 -13.46372 -12.94088 -12.67230 -12.50951 -12.41870 -12.21698 -12.11293 -11.93533 -11.84195 -11.60439 -11.44502 -11.16896 -10.90428 -10.48771 -9.48630 -8.75056 -8.09166 -6.21287 1.42247 1.44213 1.51712 2.42780 3.17591 3.33894 3.68956 3.82052 4.01357 4.23352 4.33444 4.41873 4.56328 4.66535 4.78953 4.88134 4.89700 4.90966 4.99975 5.10794 5.18341 5.22843 5.25963 5.36721 5.45226 5.48623 5.59937 5.73922 5.86071 6.31948 6.34744 6.56063 6.73113 6.83683 6.97606 7.47890 8.95888 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044401 B = 0.008813 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.466000 B = 3176.463223 C = 3566.978941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.221 3.779 3 H -0.042 1.042 4 C -0.511 4.511 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.545 5.545 13 C 0.071 3.929 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.104 3.896 17 H 0.066 0.934 18 N -0.845 5.845 19 C -0.102 4.102 20 C 0.065 3.935 21 H 0.061 0.939 22 H 0.032 0.968 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.030 0.970 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.347 0.653 32 H 0.344 0.656 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.011 0.989 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -4.901 11.712 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 H -0.024 1.024 4 C -0.550 4.550 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.270 5.270 13 C -0.058 4.058 14 C -0.142 4.142 15 C -0.173 4.173 16 C -0.007 4.007 17 H 0.084 0.916 18 N -0.374 5.374 19 C -0.141 4.141 20 C -0.063 4.063 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.081 -5.095 11.506 13.229 hybrid contribution 1.293 0.691 -1.230 1.914 sum 5.374 -4.404 10.276 12.405 Atomic orbital electron populations 1.21700 0.97655 0.98674 1.00228 1.19061 0.92379 0.89844 0.87333 1.02417 1.21358 1.30738 1.12089 0.90806 0.92448 1.25715 0.95497 0.95807 1.01891 1.70013 1.37901 1.24328 1.24051 0.85594 0.78715 0.78677 0.78543 1.19753 1.21001 1.19663 1.60850 1.05731 1.58304 1.02108 1.21643 0.88296 0.96506 0.99325 1.20330 1.00058 0.97032 0.96736 1.21306 0.97874 1.01917 0.96196 1.21000 0.94737 0.95026 0.89968 0.91574 1.59020 1.64049 1.07524 1.06817 1.21352 1.00718 0.96010 0.95974 1.22340 0.98525 0.95713 0.89723 0.92060 0.94888 0.95585 0.92974 0.95169 0.93192 0.91962 0.93031 0.92043 0.91142 0.83926 0.84261 0.89943 0.92459 0.97054 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.29 8.24 71.98 0.59 -5.69 16 2 C 0.22 11.51 1.96 44.17 0.09 11.60 16 3 H -0.04 -2.43 8.13 -2.39 -0.02 -2.45 16 4 C -0.51 -28.55 7.51 25.60 0.19 -28.36 16 5 H 0.06 3.19 7.47 -2.91 -0.02 3.16 16 6 C 0.01 0.51 5.29 84.65 0.45 0.95 16 7 N -0.92 -54.00 11.29 21.45 0.24 -53.76 16 8 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.54 -23.46 3.88 -875.12 -3.40 -26.86 16 13 C 0.07 2.78 4.97 87.12 0.43 3.21 16 14 C -0.10 -3.25 5.37 28.74 0.15 -3.10 16 15 C -0.13 -3.32 4.96 28.93 0.14 -3.18 16 16 C 0.10 2.77 2.94 44.64 0.13 2.90 16 17 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 18 N -0.84 -17.52 9.14 -169.84 -1.55 -19.07 16 19 C -0.10 -2.91 4.94 30.15 0.15 -2.76 16 20 C 0.07 2.40 4.30 86.46 0.37 2.77 16 21 H 0.06 3.41 5.94 -2.39 -0.01 3.40 16 22 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.03 1.16 6.90 -2.39 -0.02 1.15 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.03 1.10 6.80 -2.38 -0.02 1.08 16 26 H 0.05 2.24 6.57 -2.39 -0.02 2.22 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 29 H 0.06 1.42 7.59 -2.39 -0.02 1.40 16 30 H 0.07 1.49 8.08 -2.38 -0.02 1.47 16 31 H 0.35 6.11 8.99 -89.69 -0.81 5.30 16 32 H 0.34 5.90 8.98 -89.69 -0.81 5.09 16 33 H 0.08 2.15 7.96 -2.39 -0.02 2.14 16 34 H 0.06 1.54 6.67 -2.38 -0.02 1.52 16 35 H 0.01 0.43 8.01 -2.39 -0.02 0.42 16 36 H 0.06 2.28 7.04 -2.39 -0.02 2.26 16 Total: -1.00 -60.45 271.26 -0.53 -60.98 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -0.55 Total: 14.15 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 2.70 Total: -21.66 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -4.71 Total: -99.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.45 -0.53 -60.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.059 kcal (2) G-P(sol) polarization free energy of solvation -60.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds