Wall clock time and date at job start Mon Mar 30 2020 03:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47358 * 2 1 4 4 C 1.50704 * 109.47316 * 119.99822 * 2 1 3 5 5 H 1.07997 * 119.99877 * 119.99837 * 4 2 1 6 6 C 1.37877 * 120.00115 * 300.00188 * 4 2 1 7 7 N 1.31513 * 120.00028 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47245 * 60.00065 * 8 6 4 10 10 H 1.48501 * 109.47272 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47450 * 300.00300 * 8 6 4 12 12 N 1.46900 * 109.47361 * 239.99977 * 2 1 3 13 13 C 1.47804 * 110.99623 * 68.50490 * 12 2 1 14 14 C 1.45863 * 112.82419 * 153.82210 * 13 12 2 15 15 C 1.54512 * 111.59715 * 61.37887 * 14 13 12 16 16 C 1.50457 * 108.84681 * 282.79415 * 15 14 13 17 17 H 1.09000 * 108.77114 * 331.24617 * 16 15 14 18 18 N 1.46897 * 108.77435 * 212.95917 * 16 15 14 19 19 C 1.54294 * 113.03066 * 92.15824 * 16 15 14 20 20 C 1.44368 * 110.95050 * 306.61837 * 12 2 1 21 21 H 1.09003 * 109.47161 * 306.32427 * 1 2 3 22 22 H 1.08997 * 109.47467 * 66.32511 * 1 2 3 23 23 H 1.09003 * 109.47095 * 186.32326 * 1 2 3 24 24 H 0.96993 * 120.00268 * 179.97438 * 7 6 4 25 25 H 1.08998 * 108.80034 * 32.99848 * 13 12 2 26 26 H 1.09001 * 108.79702 * 274.65154 * 13 12 2 27 27 H 1.09003 * 109.06122 * 181.92177 * 14 13 12 28 28 H 1.08995 * 109.05666 * 300.90254 * 14 13 12 29 29 H 1.08996 * 109.57122 * 42.60381 * 15 14 13 30 30 H 1.09005 * 109.57272 * 162.98641 * 15 14 13 31 31 H 1.00903 * 110.99727 * 60.00311 * 18 16 15 32 32 H 1.00898 * 110.99898 * 183.95224 * 18 16 15 33 33 H 1.08998 * 108.91392 * 79.02648 * 19 16 15 34 34 H 1.09001 * 108.91665 * 197.67633 * 19 16 15 35 35 H 1.09002 * 109.02913 * 98.75670 * 20 12 2 36 36 H 1.08994 * 109.02481 * 339.98620 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8296 2.6035 8 14 2.3214 -1.1203 4.0079 9 1 3.8064 -1.1208 4.0081 10 1 1.8260 -0.4206 5.2205 11 1 1.8260 -2.5202 4.0077 12 7 2.0197 -0.6925 -1.1994 13 6 1.7195 0.0855 -2.4198 14 6 2.6498 -0.1894 -3.5091 15 6 2.5980 -1.6722 -3.9406 16 6 3.3530 -2.4978 -2.9345 17 1 4.1329 -1.8805 -2.4887 18 7 3.9846 -3.6278 -3.6288 19 6 2.4529 -3.0497 -1.8094 20 6 1.4336 -2.0070 -1.3120 21 1 -0.3633 0.6088 0.8280 22 1 -0.3634 0.4126 -0.9411 23 1 -0.3633 -1.0214 0.1132 24 1 0.7081 1.1608 3.4844 25 1 1.7647 1.1476 -2.1792 26 1 0.7096 -0.1564 -2.7509 27 1 2.3941 0.4386 -4.3626 28 1 3.6616 0.0498 -3.1820 29 1 1.5608 -2.0046 -3.9813 30 1 3.0578 -1.7829 -4.9227 31 1 4.6260 -3.3040 -4.3373 32 1 4.4477 -4.2408 -2.9747 33 1 1.9141 -3.9204 -2.1830 34 1 3.0808 -3.3554 -0.9725 35 1 0.5990 -1.9653 -2.0119 36 1 1.0601 -2.3144 -0.3353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:16 Heat of formation + Delta-G solvation = -21.240620 kcal Electronic energy + Delta-G solvation = -15207.961288 eV Core-core repulsion = 12918.727300 eV Total energy + Delta-G solvation = -2289.233988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.41073 -37.15042 -34.88564 -33.59462 -31.62105 -29.66612 -27.31905 -26.50990 -24.95822 -22.87553 -21.02668 -19.95735 -18.16819 -17.26722 -16.91561 -16.27413 -15.96294 -15.56132 -15.04492 -14.76731 -14.59038 -13.87882 -13.75964 -13.32232 -12.93193 -12.90380 -12.68147 -12.37969 -12.27382 -12.15271 -12.11821 -11.59628 -11.47169 -11.32359 -11.19809 -10.85412 -10.49323 -9.51864 -8.83757 -8.10854 -6.20592 1.41891 1.43013 1.50704 2.42458 3.18393 3.36033 3.60139 4.02040 4.07978 4.25372 4.39162 4.42167 4.64149 4.69087 4.71062 4.82540 4.84040 4.92030 5.08491 5.10056 5.13885 5.27078 5.30851 5.36814 5.43631 5.53400 5.54327 5.71817 5.81352 6.23596 6.34446 6.57662 6.71216 6.78532 6.94715 7.48395 8.95623 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.009478 C = 0.008182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.162324 B = 2953.537689 C = 3421.366615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.528 5.528 13 C 0.052 3.948 14 C -0.107 4.107 15 C -0.098 4.098 16 C 0.108 3.892 17 H 0.021 0.979 18 N -0.851 5.851 19 C -0.096 4.096 20 C 0.069 3.931 21 H 0.056 0.944 22 H 0.025 0.975 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.347 0.653 32 H 0.342 0.658 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.029 0.971 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -5.174 -11.055 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.251 5.251 13 C -0.076 4.076 14 C -0.145 4.145 15 C -0.136 4.136 16 C -0.003 4.003 17 H 0.039 0.961 18 N -0.382 5.382 19 C -0.135 4.135 20 C -0.060 4.060 21 H 0.075 0.925 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.019 -5.293 -11.098 12.661 hybrid contribution 0.097 0.390 1.576 1.626 sum 3.116 -4.903 -9.522 11.155 Atomic orbital electron populations 1.22214 1.00247 0.99600 0.99114 1.19169 0.89927 0.92806 0.87315 0.97721 1.21300 1.30493 1.12289 0.90887 0.92820 1.25677 0.95469 0.95835 1.01776 1.70015 1.37914 1.24208 1.24024 0.85630 0.78683 0.78700 0.78723 1.19887 1.20999 1.19723 1.61916 1.58718 1.02559 1.01944 1.21030 0.97603 0.97446 0.91498 1.20565 0.99798 0.97044 0.97105 1.21284 1.00497 0.93536 0.98287 1.20894 0.95646 0.90819 0.92929 0.96111 1.58936 1.40089 1.20366 1.18776 1.21897 0.97514 0.97305 0.96777 1.21707 0.94792 0.90270 0.99261 0.92470 0.95592 0.95218 0.93011 0.93356 0.95371 0.89824 0.92410 0.92529 0.90176 0.84007 0.84572 0.91185 0.93804 0.95276 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.47 8.26 71.98 0.59 -6.88 16 2 C 0.22 10.99 2.24 44.17 0.10 11.09 16 3 H 0.00 0.28 7.82 -2.38 -0.02 0.26 16 4 C -0.51 -28.33 7.57 25.60 0.19 -28.14 16 5 H 0.05 2.99 7.63 -2.91 -0.02 2.97 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.44 11.39 21.45 0.24 -53.19 16 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.53 -22.43 4.19 -890.63 -3.73 -26.16 16 13 C 0.05 1.85 4.11 83.94 0.35 2.19 16 14 C -0.11 -3.02 5.53 28.92 0.16 -2.86 16 15 C -0.10 -2.58 5.26 30.29 0.16 -2.42 16 16 C 0.11 3.11 2.85 44.53 0.13 3.23 16 17 H 0.02 0.69 7.38 -2.39 -0.02 0.67 16 18 N -0.85 -19.56 9.14 -170.28 -1.56 -21.11 16 19 C -0.10 -3.18 5.62 31.40 0.18 -3.01 16 20 C 0.07 2.71 3.73 87.14 0.32 3.04 16 21 H 0.06 3.10 6.27 -2.39 -0.01 3.09 16 22 H 0.03 1.12 6.99 -2.39 -0.02 1.10 16 23 H 0.03 1.42 6.74 -2.39 -0.02 1.40 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.05 1.80 7.60 -2.39 -0.02 1.79 16 26 H 0.03 0.98 6.77 -2.39 -0.02 0.96 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 29 H 0.06 1.57 7.15 -2.39 -0.02 1.56 16 30 H 0.08 1.77 7.80 -2.38 -0.02 1.75 16 31 H 0.35 6.54 8.84 -89.69 -0.79 5.75 16 32 H 0.34 7.30 8.93 -89.70 -0.80 6.50 16 33 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.03 1.08 6.51 -2.39 -0.02 1.06 16 36 H 0.05 2.27 5.74 -2.39 -0.01 2.26 16 Total: -1.00 -59.37 268.52 -0.91 -60.28 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.53 Total: 16.73 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 2.63 Total: -22.70 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -5.04 Total: -100.47 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.37 -0.91 -60.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -59.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds