Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47198 * 2 1 4 4 C 1.50701 * 109.47581 * 119.99598 * 2 1 3 5 5 H 1.08002 * 119.99716 * 120.00118 * 4 2 1 6 6 C 1.37874 * 120.00089 * 300.00699 * 4 2 1 7 7 N 1.31517 * 119.99892 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99845 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46938 * 90.00302 * 8 6 4 10 10 H 1.48497 * 109.47090 * 210.00315 * 8 6 4 11 11 H 1.48504 * 109.47311 * 330.00264 * 8 6 4 12 12 N 1.46899 * 109.47437 * 240.00019 * 2 1 3 13 13 C 1.47938 * 111.00115 * 301.03269 * 12 2 1 14 14 C 1.53917 * 113.33637 * 192.18350 * 13 12 2 15 15 C 1.50416 * 112.89086 * 317.77418 * 14 13 12 16 16 C 1.54527 * 108.93108 * 91.80959 * 15 14 13 17 17 H 1.09001 * 109.04289 * 43.23616 * 16 15 14 18 18 N 1.46894 * 109.04462 * 162.18916 * 16 15 14 19 19 C 1.45882 * 111.60708 * 282.71445 * 16 15 14 20 20 C 1.44303 * 111.00464 * 173.62211 * 12 2 1 21 21 H 1.09000 * 109.47425 * 66.50399 * 1 2 3 22 22 H 1.09001 * 109.46661 * 186.50323 * 1 2 3 23 23 H 1.09001 * 109.47221 * 306.50413 * 1 2 3 24 24 H 0.97005 * 119.99302 * 179.97438 * 7 6 4 25 25 H 1.08998 * 108.70936 * 313.18881 * 13 12 2 26 26 H 1.09004 * 108.70946 * 71.18891 * 13 12 2 27 27 H 1.09000 * 108.78388 * 78.64514 * 14 13 12 28 28 H 1.08996 * 108.79378 * 196.97207 * 14 13 12 29 29 H 1.08998 * 109.61861 * 331.92936 * 15 14 13 30 30 H 1.08995 * 109.46502 * 211.59724 * 15 14 13 31 31 H 1.00898 * 110.99955 * 301.04816 * 18 16 15 32 32 H 1.00907 * 110.99810 * 64.99895 * 18 16 15 33 33 H 1.09003 * 108.84206 * 182.27694 * 19 16 15 34 34 H 1.09001 * 108.84369 * 300.63755 * 19 16 15 35 35 H 1.09001 * 109.69651 * 101.64278 * 20 12 2 36 36 H 1.09007 * 109.69449 * 341.05931 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1374 -0.8595 3.5565 8 14 0.6257 1.2798 2.6541 9 1 -0.8021 0.8742 2.6993 10 1 0.9770 1.9954 3.9069 11 1 0.8488 2.1773 1.4921 12 7 2.0197 -0.6925 -1.1994 13 6 1.5252 -2.0860 -1.2461 14 6 2.2329 -2.9488 -2.3062 15 6 2.4391 -2.2241 -3.6080 16 6 3.8238 -1.5387 -3.5864 17 1 4.5560 -2.2292 -3.1677 18 7 4.2140 -1.2029 -4.9622 19 6 3.8072 -0.3195 -2.7854 20 6 3.4544 -0.5835 -1.3100 21 1 -0.3634 0.4097 -0.9424 22 1 -0.3633 -1.0211 0.1164 23 1 -0.3634 0.6113 0.8260 24 1 1.9033 -0.5278 4.4375 25 1 1.6734 -2.5426 -0.2676 26 1 0.4572 -2.0709 -1.4638 27 1 3.2039 -3.2560 -1.9175 28 1 1.6323 -3.8392 -2.4923 29 1 1.6610 -1.4714 -3.7350 30 1 2.3976 -2.9373 -4.4312 31 1 4.2515 -2.0297 -5.5394 32 1 3.5909 -0.5143 -5.3569 33 1 4.7912 0.1470 -2.8340 34 1 3.0728 0.3678 -3.2055 35 1 3.9198 -1.5128 -0.9815 36 1 3.8086 0.2431 -0.6939 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = 2.313549 kcal Electronic energy + Delta-G solvation = -15230.500061 eV Core-core repulsion = 12942.287459 eV Total energy + Delta-G solvation = -2288.212603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.95605 -35.97941 -32.83847 -31.92983 -30.83721 -28.55208 -25.44649 -24.79007 -23.50729 -20.80188 -20.05044 -18.73966 -16.60744 -16.01362 -15.48478 -14.85548 -14.58852 -14.12888 -13.40735 -13.08190 -12.89505 -12.70218 -12.28934 -12.11433 -11.64775 -11.45849 -11.00634 -10.84135 -10.61428 -10.46364 -10.35784 -10.06898 -9.92318 -9.83152 -9.53083 -9.25895 -8.59285 -8.51212 -7.07227 -6.12157 -4.12437 3.25748 3.36100 3.38295 4.37352 4.65388 4.92089 5.03410 5.20513 5.22567 5.52234 5.64464 5.83919 5.91496 6.04702 6.15237 6.21598 6.32227 6.38170 6.44743 6.52745 6.55089 6.60781 6.71135 6.73948 6.82001 6.90827 7.06877 7.26770 7.29356 7.54598 7.60017 8.16184 8.30872 8.46611 8.90009 9.51809 11.00972 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049100 B = 0.008743 C = 0.008669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.130072 B = 3201.764202 C = 3229.309530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.178 3.822 3 H 0.038 0.962 4 C -0.543 4.543 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.899 5.899 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.266 1.266 12 N -0.537 5.537 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.140 4.140 16 C 0.098 3.902 17 H 0.069 0.931 18 N -0.849 5.849 19 C -0.111 4.111 20 C 0.079 3.921 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.037 0.963 24 H 0.263 0.737 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.334 0.666 32 H 0.336 0.664 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.036 0.964 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -0.985 -12.826 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.581 4.581 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.226 1.226 11 H -0.191 1.191 12 N -0.261 5.261 13 C -0.066 4.066 14 C -0.155 4.155 15 C -0.179 4.179 16 C -0.013 4.013 17 H 0.087 0.913 18 N -0.377 5.377 19 C -0.150 4.150 20 C -0.051 4.051 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.390 -0.503 -12.700 12.716 hybrid contribution -1.287 -0.132 0.807 1.525 sum -0.897 -0.635 -11.893 11.944 Atomic orbital electron populations 1.22147 0.98833 1.00665 0.98496 1.19774 0.91316 0.94670 0.87239 0.94372 1.21636 1.32580 1.14092 0.89827 0.90753 1.24989 0.95522 0.96625 0.95859 1.69924 1.45498 1.40302 0.97974 0.86820 0.80573 0.83722 0.76840 1.20672 1.22592 1.19075 1.61121 1.10288 1.14238 1.40488 1.22274 0.98067 0.88687 0.97606 1.21300 1.00698 0.98087 0.95428 1.22089 0.99204 0.99633 0.96995 1.20487 0.94288 0.97576 0.88927 0.91263 1.59117 1.58365 1.16277 1.03910 1.20562 1.01119 0.97024 0.96276 1.21444 0.89154 1.00774 0.93693 0.94434 0.93040 0.94446 0.92689 0.92907 0.92426 0.92703 0.92577 0.90951 0.93477 0.85468 0.85145 0.92245 0.91824 0.94595 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.12 37.16 0.30 -2.84 16 2 C 0.18 4.14 1.74 -68.87 -0.12 4.02 16 3 H 0.04 0.93 6.96 -51.92 -0.36 0.57 16 4 C -0.54 -14.78 7.64 -34.44 -0.26 -15.05 16 5 H 0.07 2.22 6.95 -52.49 -0.36 1.85 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 8 Si 0.89 21.90 24.31 -169.99 -4.13 17.77 16 9 H -0.28 -6.75 6.93 56.52 0.39 -6.35 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 12 N -0.54 -10.78 3.97 -228.04 -0.91 -11.69 16 13 C 0.06 1.16 4.52 -2.77 -0.01 1.14 16 14 C -0.12 -1.79 5.28 -27.54 -0.15 -1.93 16 15 C -0.14 -1.90 5.20 -27.22 -0.14 -2.04 16 16 C 0.10 1.35 2.79 -70.28 -0.20 1.15 16 17 H 0.07 1.01 7.59 -51.93 -0.39 0.62 16 18 N -0.85 -9.98 9.19 -6.88 -0.06 -10.05 16 19 C -0.11 -1.74 4.81 -29.59 -0.14 -1.88 16 20 C 0.08 1.51 4.66 -4.70 -0.02 1.48 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.05 1.11 7.01 -51.93 -0.36 0.74 16 23 H 0.04 0.84 3.47 -51.93 -0.18 0.66 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.05 1.16 6.19 -51.93 -0.32 0.84 16 26 H 0.06 1.06 7.07 -51.93 -0.37 0.69 16 27 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.07 7.78 -51.93 -0.40 0.66 16 30 H 0.05 0.56 8.05 -51.93 -0.42 0.14 16 31 H 0.33 3.33 8.95 -39.29 -0.35 2.98 16 32 H 0.34 3.66 8.97 -39.29 -0.35 3.31 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.04 0.71 6.79 -51.93 -0.35 0.36 16 36 H 0.07 1.43 7.43 -51.92 -0.39 1.04 16 LS Contribution 262.87 15.07 3.96 3.96 Total: -1.00 -28.76 262.87 -7.03 -35.79 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.83 Total: 4.67 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -0.84 Total: -13.96 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.20 Total: -48.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.76 -7.03 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.102 kcal (2) G-P(sol) polarization free energy of solvation -28.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds