Wall clock time and date at job start Mon Mar 30 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09007 * 109.46895 * 2 1 4 4 C 1.50694 * 109.47290 * 239.99643 * 2 1 3 5 5 H 1.08000 * 120.00327 * 239.99976 * 4 2 1 6 6 C 1.37878 * 119.99986 * 60.00376 * 4 2 1 7 7 N 1.31512 * 120.00139 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99923 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47337 * 59.99748 * 8 6 4 10 10 H 1.48501 * 109.46784 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47108 * 299.99517 * 8 6 4 12 12 N 1.46903 * 109.46940 * 119.99327 * 2 1 3 13 13 C 1.47799 * 111.00137 * 297.40012 * 12 2 1 14 14 C 1.45859 * 112.91870 * 153.86519 * 13 12 2 15 15 C 1.54515 * 111.59001 * 61.32726 * 14 13 12 16 16 C 1.50463 * 108.84934 * 282.80689 * 15 14 13 17 17 H 1.08994 * 108.77161 * 331.35393 * 16 15 14 18 18 N 1.46901 * 108.76922 * 213.06974 * 16 15 14 19 19 C 1.54289 * 113.03329 * 92.15494 * 16 15 14 20 20 C 1.44266 * 110.99946 * 175.41585 * 12 2 1 21 21 H 1.08998 * 109.47270 * 306.48166 * 1 2 3 22 22 H 1.08992 * 109.46693 * 186.47624 * 1 2 3 23 23 H 1.09004 * 109.46710 * 66.47734 * 1 2 3 24 24 H 0.97002 * 120.00268 * 180.02562 * 7 6 4 25 25 H 1.09003 * 108.79192 * 274.75511 * 13 12 2 26 26 H 1.09007 * 108.79348 * 33.09107 * 13 12 2 27 27 H 1.08997 * 109.05863 * 181.87200 * 14 13 12 28 28 H 1.08999 * 109.05726 * 300.85652 * 14 13 12 29 29 H 1.08990 * 109.57247 * 42.61992 * 15 14 13 30 30 H 1.09002 * 109.57453 * 162.99738 * 15 14 13 31 31 H 1.00903 * 111.00297 * 59.99983 * 18 16 15 32 32 H 1.00900 * 111.00030 * 183.95923 * 18 16 15 33 33 H 1.09003 * 108.92061 * 79.02092 * 19 16 15 34 34 H 1.09003 * 108.92095 * 197.66931 * 19 16 15 35 35 H 1.09000 * 108.97734 * 339.95817 * 20 12 2 36 36 H 1.08998 * 108.97882 * 98.66874 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.8261 -2.5204 -4.0076 10 1 1.8262 -0.4208 -5.2204 11 1 3.8066 -1.1211 -4.0080 12 7 2.0197 -0.6924 1.1996 13 6 1.5976 0.0131 2.4278 14 6 1.5029 -0.8690 3.5855 15 6 2.8672 -1.5101 3.9250 16 6 3.1354 -2.6261 2.9521 17 1 2.1827 -3.0375 2.6188 18 7 3.8904 -3.6817 3.6403 19 6 3.9361 -2.1690 1.7150 20 6 3.4578 -0.8056 1.1803 21 1 -0.3634 0.6110 0.8263 22 1 -0.3632 -1.0211 0.1159 23 1 -0.3633 0.4102 -0.9423 24 1 0.7084 1.1607 -3.4845 25 1 2.3182 0.8016 2.6451 26 1 0.6222 0.4678 2.2540 27 1 1.1565 -0.2937 4.4440 28 1 0.7827 -1.6591 3.3729 29 1 3.6532 -0.7593 3.8454 30 1 2.8413 -1.9082 4.9393 31 1 3.3701 -4.0459 4.4243 32 1 4.1449 -4.4197 3.0009 33 1 4.9897 -2.0932 1.9841 34 1 3.8258 -2.9144 0.9273 35 1 3.8093 -0.6834 0.1559 36 1 3.8840 -0.0139 1.7965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400638.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:21 Heat of formation + Delta-G solvation = 0.482232 kcal Electronic energy + Delta-G solvation = -15180.419957 eV Core-core repulsion = 12892.127942 eV Total energy + Delta-G solvation = -2288.292014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80177 -35.53680 -33.17612 -31.97674 -30.30205 -28.10492 -25.71267 -24.88445 -22.97375 -20.91030 -19.53825 -18.71462 -16.19574 -15.84518 -15.42299 -14.66165 -14.44886 -14.14405 -13.68000 -13.02097 -12.86663 -12.44848 -12.18320 -11.67682 -11.25692 -10.99371 -10.97711 -10.73639 -10.56095 -10.30227 -10.16482 -10.10774 -10.06238 -9.63745 -9.58661 -8.86615 -8.42056 -8.39845 -7.13620 -6.01161 -4.05836 3.31577 3.36039 3.38870 4.40113 4.72997 4.93688 5.25034 5.31063 5.43505 5.58716 5.78484 5.86757 5.96938 6.05383 6.19065 6.27784 6.38889 6.50603 6.61316 6.62742 6.73569 6.78231 6.87496 6.92903 7.10889 7.18386 7.43958 7.55289 7.66078 7.80527 7.83374 8.29184 8.40098 8.62791 9.01850 9.58869 11.05096 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037769 B = 0.009570 C = 0.008103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.163397 B = 2925.100383 C = 3454.836078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.523 5.523 13 C 0.045 3.955 14 C -0.110 4.110 15 C -0.104 4.104 16 C 0.102 3.898 17 H 0.039 0.961 18 N -0.856 5.856 19 C -0.100 4.100 20 C 0.059 3.941 21 H 0.008 0.992 22 H 0.032 0.968 23 H 0.087 0.913 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.333 0.667 32 H 0.335 0.665 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -4.332 9.596 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.248 5.248 13 C -0.083 4.083 14 C -0.148 4.148 15 C -0.142 4.142 16 C -0.009 4.009 17 H 0.058 0.942 18 N -0.385 5.385 19 C -0.139 4.139 20 C -0.071 4.071 21 H 0.026 0.974 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.630 -4.106 9.570 10.741 hybrid contribution -0.188 -0.264 -1.136 1.181 sum 2.442 -4.370 8.434 9.808 Atomic orbital electron populations 1.21848 0.97859 0.98596 1.00782 1.19289 0.92308 0.92018 0.85789 0.98536 1.21113 1.30939 1.12298 0.89804 0.91934 1.24930 0.95244 0.95085 0.98992 1.69878 1.36778 1.23017 1.23510 0.86600 0.79108 0.79763 0.82170 1.20270 1.21359 1.20318 1.61724 1.09838 1.51162 1.02064 1.21025 1.00714 0.94935 0.91645 1.20587 0.97140 0.99811 0.97257 1.21326 0.97278 0.97796 0.97766 1.21064 0.95055 0.91568 0.93187 0.94246 1.58998 1.49649 1.16249 1.13608 1.21961 0.98092 0.98356 0.95494 1.21819 0.89513 0.94256 1.01535 0.97359 0.94912 0.89479 0.92920 0.96060 0.91480 0.92691 0.91837 0.92051 0.92551 0.85575 0.85307 0.92468 0.92655 0.89570 0.96232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.81 37.16 0.33 -2.93 16 2 C 0.21 5.35 1.98 -68.86 -0.14 5.21 16 3 H 0.00 -0.08 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.66 7.38 -34.44 -0.25 -13.92 16 5 H 0.06 1.69 6.90 -52.49 -0.36 1.33 16 6 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 7 N -0.89 -25.40 11.29 55.43 0.63 -24.77 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.52 -11.22 4.08 -232.94 -0.95 -12.17 16 13 C 0.04 0.83 4.79 -6.71 -0.03 0.80 16 14 C -0.11 -1.69 5.53 -29.32 -0.16 -1.86 16 15 C -0.10 -1.53 5.26 -27.20 -0.14 -1.68 16 16 C 0.10 1.58 2.85 -68.30 -0.19 1.38 16 17 H 0.04 0.68 7.38 -51.93 -0.38 0.30 16 18 N -0.86 -11.12 9.15 -5.17 -0.05 -11.17 16 19 C -0.10 -1.73 5.63 -25.50 -0.14 -1.88 16 20 C 0.06 1.18 4.68 -4.68 -0.02 1.16 16 21 H 0.01 0.17 6.34 -51.93 -0.33 -0.16 16 22 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.09 2.34 5.92 -51.93 -0.31 2.04 16 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.02 0.39 7.24 -51.93 -0.38 0.02 16 26 H 0.07 1.28 5.66 -51.93 -0.29 0.99 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.02 7.58 -51.93 -0.39 0.62 16 29 H 0.06 0.96 7.15 -51.93 -0.37 0.59 16 30 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 31 H 0.33 3.71 8.84 -39.29 -0.35 3.37 16 32 H 0.34 4.02 8.93 -39.29 -0.35 3.67 16 33 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.94 5.86 -51.93 -0.30 1.63 16 36 H 0.02 0.38 6.51 -51.93 -0.34 0.04 16 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -27.86 268.70 -8.01 -35.87 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.81 Total: 4.13 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.85 Total: -12.19 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.37 Total: -48.11 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.86 -8.01 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400638.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.348 kcal (2) G-P(sol) polarization free energy of solvation -27.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds