Wall clock time and date at job start Mon Mar 30 2020 03:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46815 * 2 1 4 4 C 1.50696 * 109.46877 * 120.00611 * 2 1 3 5 5 H 1.07999 * 120.00342 * 116.97665 * 4 2 1 6 6 C 1.37873 * 119.99826 * 296.96877 * 4 2 1 7 7 N 1.31519 * 120.00330 * 352.65058 * 6 4 2 8 8 Si 1.86805 * 120.00072 * 172.65655 * 6 4 2 9 9 H 1.48508 * 109.46622 * 265.07226 * 8 6 4 10 10 H 1.48497 * 109.47310 * 145.07063 * 8 6 4 11 11 H 1.48505 * 109.46964 * 25.06832 * 8 6 4 12 12 N 1.46907 * 109.46736 * 240.00346 * 2 1 3 13 13 C 1.46847 * 111.00091 * 295.78779 * 12 2 1 14 14 C 1.53030 * 109.52225 * 185.84123 * 13 12 2 15 15 C 1.53117 * 109.28170 * 300.82135 * 14 13 12 16 16 C 1.53121 * 109.16008 * 57.65486 * 15 14 13 17 17 C 1.52997 * 109.50377 * 182.40699 * 16 15 14 18 18 N 1.46901 * 109.53103 * 62.30738 * 16 15 14 19 19 C 1.46839 * 111.00015 * 60.00310 * 12 2 1 20 20 H 1.08999 * 109.47030 * 58.02833 * 1 2 3 21 21 H 1.08998 * 109.47195 * 178.02970 * 1 2 3 22 22 H 1.09000 * 109.46810 * 298.02685 * 1 2 3 23 23 H 0.96995 * 120.00021 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.46108 * 305.86214 * 13 12 2 25 25 H 1.08997 * 109.45898 * 65.82390 * 13 12 2 26 26 H 1.09006 * 109.50295 * 180.88125 * 14 13 12 27 27 H 1.09001 * 109.50373 * 60.76417 * 14 13 12 28 28 H 1.09005 * 109.52403 * 297.75096 * 15 14 13 29 29 H 1.08995 * 109.57710 * 177.59464 * 15 14 13 30 30 H 1.09003 * 109.47259 * 179.80328 * 17 16 15 31 31 H 1.09005 * 109.46832 * 299.80412 * 17 16 15 32 32 H 1.09004 * 109.47430 * 59.79999 * 17 16 15 33 33 H 1.00895 * 111.00217 * 60.18442 * 18 16 15 34 34 H 1.00906 * 110.99335 * 184.13216 * 18 16 15 35 35 H 1.09004 * 109.46545 * 294.17113 * 19 12 2 36 36 H 1.09000 * 109.47076 * 54.14259 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6123 -1.6162 1.1320 6 6 1.7515 -0.2042 2.4817 7 7 1.1725 0.9706 2.6010 8 14 2.1937 -1.1869 4.0076 9 1 1.0139 -1.9737 4.4487 10 1 2.6036 -0.2591 5.0923 11 1 3.3149 -2.1090 3.6949 12 7 2.0196 -0.6925 -1.1996 13 6 1.6327 -2.1090 -1.1843 14 6 2.2799 -2.8287 -2.3696 15 6 1.8215 -2.1691 -3.6732 16 6 2.1935 -0.6841 -3.6429 17 6 1.6858 -0.0043 -4.9161 18 7 3.6537 -0.5452 -3.5616 19 6 1.5488 -0.0265 -2.4206 20 1 -0.3633 0.5441 -0.8718 21 1 -0.3633 -1.0270 -0.0353 22 1 -0.3633 0.4829 0.9072 23 1 0.9746 1.3265 3.4813 24 1 1.9683 -2.5671 -0.2539 25 1 0.5483 -2.1900 -1.2583 26 1 1.9800 -3.8766 -2.3669 27 1 3.3648 -2.7599 -2.2889 28 1 0.7409 -2.2720 -3.7731 29 1 2.3129 -2.6506 -4.5186 30 1 1.9478 1.0535 -4.8924 31 1 2.1453 -0.4731 -5.7863 32 1 0.6025 -0.1090 -4.9767 33 1 4.1025 -0.9719 -4.3582 34 1 3.9202 0.4240 -3.4726 35 1 0.4647 -0.1173 -2.4890 36 1 1.8235 1.0279 -2.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:18 Heat of formation + Delta-G solvation = -3.329828 kcal Electronic energy + Delta-G solvation = -15262.547858 eV Core-core repulsion = 12974.090540 eV Total energy + Delta-G solvation = -2288.457318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.98455 -35.44120 -32.67076 -31.52790 -28.95658 -28.26766 -26.29451 -25.02451 -23.47480 -21.46632 -19.59320 -18.27611 -16.01128 -15.41286 -15.21185 -14.49063 -14.13722 -13.67869 -13.57475 -12.94689 -12.74736 -12.56041 -12.09771 -11.78655 -11.58852 -11.50049 -11.08795 -10.90586 -10.66208 -10.44038 -10.38302 -10.16398 -10.02467 -9.69732 -9.32676 -8.77668 -8.27889 -8.13994 -6.88189 -5.95983 -3.95673 3.35291 3.42199 3.46565 4.47870 4.77213 5.01205 5.16723 5.27164 5.37761 5.51879 5.60543 5.79989 5.84641 6.04224 6.09336 6.17556 6.30091 6.35379 6.41410 6.50326 6.55747 6.74408 6.89809 6.99304 7.02476 7.19757 7.55801 7.66441 7.76304 7.89314 7.93381 8.24432 8.52011 8.76508 9.11066 9.68001 11.13569 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047331 B = 0.008831 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.432196 B = 3169.799487 C = 3381.327828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.209 3.791 3 H 0.042 0.958 4 C -0.498 4.498 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.511 5.511 13 C 0.064 3.936 14 C -0.110 4.110 15 C -0.102 4.102 16 C 0.119 3.881 17 C -0.180 4.180 18 N -0.815 5.815 19 C 0.070 3.930 20 H 0.010 0.990 21 H 0.029 0.971 22 H 0.073 0.927 23 H 0.259 0.741 24 H 0.082 0.918 25 H 0.014 0.986 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.326 0.674 34 H 0.338 0.662 35 H 0.026 0.974 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -3.413 -12.041 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.720 3.280 9 H -0.210 1.210 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.234 5.234 13 C -0.064 4.064 14 C -0.148 4.148 15 C -0.140 4.140 16 C 0.025 3.975 17 C -0.240 4.240 18 N -0.344 5.344 19 C -0.059 4.059 20 H 0.029 0.971 21 H 0.048 0.952 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.043 0.957 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.952 -3.693 -11.202 11.833 hybrid contribution -0.970 0.167 -0.061 0.986 sum -0.018 -3.525 -11.263 11.802 Atomic orbital electron populations 1.22360 1.01591 0.98711 1.00062 1.19302 0.89033 0.94995 0.86391 0.94051 1.21166 1.32808 1.09926 0.89735 0.91776 1.24931 0.95588 0.94798 0.98936 1.69959 1.43469 1.16593 1.23348 0.86579 0.78565 0.79997 0.82869 1.20960 1.21397 1.19789 1.62107 1.59032 1.01083 1.01165 1.21936 0.95844 0.90410 0.98210 1.21531 1.02393 0.96844 0.94051 1.21548 0.99700 0.94471 0.98261 1.20858 0.88391 0.95146 0.93072 1.22642 1.01912 1.00728 0.98676 1.58630 1.06175 1.21963 1.47614 1.21961 0.95660 0.97677 0.90622 0.97141 0.95238 0.90766 0.93160 0.89950 0.96745 0.93469 0.90346 0.92738 0.93092 0.92831 0.93071 0.92476 0.86270 0.84903 0.95650 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.33 37.16 0.31 -3.80 16 2 C 0.21 5.36 2.30 -68.86 -0.16 5.21 16 3 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.50 -13.83 7.88 -34.44 -0.27 -14.10 16 5 H 0.06 1.79 6.29 -52.49 -0.33 1.46 16 6 C 0.06 1.64 5.21 -17.82 -0.09 1.55 16 7 N -0.89 -26.00 11.89 55.43 0.66 -25.34 16 8 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.51 -11.17 4.53 -228.08 -1.03 -12.21 16 13 C 0.06 1.31 4.75 -3.84 -0.02 1.29 16 14 C -0.11 -1.85 5.93 -26.66 -0.16 -2.00 16 15 C -0.10 -1.49 4.96 -26.61 -0.13 -1.62 16 16 C 0.12 1.76 0.84 -131.52 -0.11 1.65 16 17 C -0.18 -2.19 8.77 37.16 0.33 -1.86 16 18 N -0.82 -11.72 8.10 0.81 0.01 -11.71 16 19 C 0.07 1.31 3.76 -3.84 -0.01 1.29 16 20 H 0.01 0.22 6.64 -51.93 -0.35 -0.13 16 21 H 0.03 0.69 6.53 -51.93 -0.34 0.36 16 22 H 0.07 2.00 6.57 -51.93 -0.34 1.65 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.08 1.84 5.97 -51.93 -0.31 1.53 16 25 H 0.01 0.30 6.67 -51.93 -0.35 -0.05 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.40 7.73 -51.93 -0.40 1.00 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.33 3.91 9.00 -39.29 -0.35 3.55 16 34 H 0.34 4.71 8.99 -39.29 -0.35 4.36 16 35 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 36 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -28.80 272.59 -7.58 -36.38 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.98 Total: 4.52 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.32 Total: -12.41 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.37 Total: -49.26 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.80 -7.58 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.052 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds