Wall clock time and date at job start Mon Mar 30 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46815 * 2 1 4 4 C 1.50696 * 109.46877 * 120.00611 * 2 1 3 5 5 H 1.07999 * 120.00342 * 116.97665 * 4 2 1 6 6 C 1.37873 * 119.99826 * 296.96877 * 4 2 1 7 7 N 1.31519 * 120.00330 * 352.65058 * 6 4 2 8 8 Si 1.86805 * 120.00072 * 172.65655 * 6 4 2 9 9 H 1.48508 * 109.46622 * 265.07226 * 8 6 4 10 10 H 1.48497 * 109.47310 * 145.07063 * 8 6 4 11 11 H 1.48505 * 109.46964 * 25.06832 * 8 6 4 12 12 N 1.46907 * 109.46736 * 240.00346 * 2 1 3 13 13 C 1.46847 * 111.00091 * 295.78779 * 12 2 1 14 14 C 1.53030 * 109.52225 * 185.84123 * 13 12 2 15 15 C 1.53117 * 109.28170 * 300.82135 * 14 13 12 16 16 C 1.53121 * 109.16008 * 57.65486 * 15 14 13 17 17 C 1.52997 * 109.50377 * 182.40699 * 16 15 14 18 18 N 1.46901 * 109.53103 * 62.30738 * 16 15 14 19 19 C 1.46839 * 111.00015 * 60.00310 * 12 2 1 20 20 H 1.08999 * 109.47030 * 58.02833 * 1 2 3 21 21 H 1.08998 * 109.47195 * 178.02970 * 1 2 3 22 22 H 1.09000 * 109.46810 * 298.02685 * 1 2 3 23 23 H 0.96995 * 120.00021 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.46108 * 305.86214 * 13 12 2 25 25 H 1.08997 * 109.45898 * 65.82390 * 13 12 2 26 26 H 1.09006 * 109.50295 * 180.88125 * 14 13 12 27 27 H 1.09001 * 109.50373 * 60.76417 * 14 13 12 28 28 H 1.09005 * 109.52403 * 297.75096 * 15 14 13 29 29 H 1.08995 * 109.57710 * 177.59464 * 15 14 13 30 30 H 1.09003 * 109.47259 * 179.80328 * 17 16 15 31 31 H 1.09005 * 109.46832 * 299.80412 * 17 16 15 32 32 H 1.09004 * 109.47430 * 59.79999 * 17 16 15 33 33 H 1.00895 * 111.00217 * 60.18442 * 18 16 15 34 34 H 1.00906 * 110.99335 * 184.13216 * 18 16 15 35 35 H 1.09004 * 109.46545 * 294.17113 * 19 12 2 36 36 H 1.09000 * 109.47076 * 54.14259 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6123 -1.6162 1.1320 6 6 1.7515 -0.2042 2.4817 7 7 1.1725 0.9706 2.6010 8 14 2.1937 -1.1869 4.0076 9 1 1.0139 -1.9737 4.4487 10 1 2.6036 -0.2591 5.0923 11 1 3.3149 -2.1090 3.6949 12 7 2.0196 -0.6925 -1.1996 13 6 1.6327 -2.1090 -1.1843 14 6 2.2799 -2.8287 -2.3696 15 6 1.8215 -2.1691 -3.6732 16 6 2.1935 -0.6841 -3.6429 17 6 1.6858 -0.0043 -4.9161 18 7 3.6537 -0.5452 -3.5616 19 6 1.5488 -0.0265 -2.4206 20 1 -0.3633 0.5441 -0.8718 21 1 -0.3633 -1.0270 -0.0353 22 1 -0.3633 0.4829 0.9072 23 1 0.9746 1.3265 3.4813 24 1 1.9683 -2.5671 -0.2539 25 1 0.5483 -2.1900 -1.2583 26 1 1.9800 -3.8766 -2.3669 27 1 3.3648 -2.7599 -2.2889 28 1 0.7409 -2.2720 -3.7731 29 1 2.3129 -2.6506 -4.5186 30 1 1.9478 1.0535 -4.8924 31 1 2.1453 -0.4731 -5.7863 32 1 0.6025 -0.1090 -4.9767 33 1 4.1025 -0.9719 -4.3582 34 1 3.9202 0.4240 -3.4726 35 1 0.4647 -0.1173 -2.4890 36 1 1.8235 1.0279 -2.3884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:17 Heat of formation + Delta-G solvation = -24.121566 kcal Electronic energy + Delta-G solvation = -15263.449455 eV Core-core repulsion = 12974.090540 eV Total energy + Delta-G solvation = -2289.358915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44542 -37.06736 -34.50956 -33.13221 -30.29295 -29.93722 -27.75979 -26.93261 -25.13413 -22.94479 -21.34174 -19.66594 -18.10379 -17.03612 -16.58052 -15.99400 -15.83848 -15.30019 -15.07231 -14.48864 -14.10291 -14.02222 -13.69094 -13.30371 -13.07495 -12.87062 -12.83554 -12.68644 -12.41304 -12.27951 -12.18796 -11.89510 -11.54493 -11.30906 -10.91193 -10.75358 -10.43880 -9.24386 -8.63908 -8.11653 -6.18412 1.41813 1.42550 1.53863 2.44295 3.19184 3.39983 3.78698 3.88761 4.06010 4.26967 4.38966 4.55048 4.65738 4.68186 4.78342 4.83134 4.83644 4.91477 4.94618 5.04484 5.09461 5.17499 5.21405 5.32903 5.39532 5.58234 5.63414 5.75254 5.79534 6.21469 6.52136 6.60296 6.88099 6.92791 6.98310 7.49882 8.97501 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047331 B = 0.008831 C = 0.008279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.432196 B = 3169.799487 C = 3381.327828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.519 5.519 13 C 0.066 3.934 14 C -0.102 4.102 15 C -0.099 4.099 16 C 0.123 3.877 17 C -0.171 4.171 18 N -0.828 5.828 19 C 0.068 3.932 20 H 0.027 0.973 21 H 0.031 0.969 22 H 0.046 0.954 23 H 0.260 0.740 24 H 0.055 0.945 25 H 0.009 0.991 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.342 0.658 34 H 0.339 0.661 35 H 0.021 0.979 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 -4.673 -13.536 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.242 5.242 13 C -0.063 4.063 14 C -0.140 4.140 15 C -0.137 4.137 16 C 0.030 3.970 17 C -0.231 4.231 18 N -0.359 5.359 19 C -0.061 4.061 20 H 0.046 0.954 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.039 0.961 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.213 -4.965 -12.724 13.712 hybrid contribution -1.035 0.583 0.381 1.248 sum 0.178 -4.382 -12.343 13.099 Atomic orbital electron populations 1.22141 1.00895 0.98670 0.99400 1.19049 0.89432 0.93121 0.87856 0.97947 1.21421 1.32852 1.09813 0.90975 0.92430 1.25708 0.95582 0.95662 1.01867 1.70080 1.44332 1.17872 1.24023 0.85572 0.78497 0.78614 0.79144 1.20215 1.21007 1.19305 1.62017 1.59265 1.01838 1.01035 1.21929 0.95764 0.89611 0.98952 1.21448 1.01308 0.97755 0.93474 1.21558 1.00299 0.93999 0.97851 1.20767 0.88572 0.95377 0.92271 1.22531 1.02100 1.00744 0.97720 1.58564 1.06057 1.22350 1.48897 1.22069 0.95747 0.97347 0.90922 0.95426 0.94956 0.93484 0.93085 0.92637 0.97262 0.91338 0.91398 0.92238 0.90223 0.92669 0.90768 0.92281 0.84395 0.84805 0.96129 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.58 8.33 71.98 0.60 -6.98 16 2 C 0.21 11.24 2.30 44.17 0.10 11.34 16 3 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 4 C -0.51 -29.11 7.88 25.60 0.20 -28.91 16 5 H 0.06 3.29 6.29 -2.91 -0.02 3.27 16 6 C 0.01 0.57 5.21 84.65 0.44 1.01 16 7 N -0.92 -54.84 11.89 21.45 0.25 -54.59 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.52 -22.86 4.53 -875.52 -3.96 -26.83 16 13 C 0.07 2.66 4.75 86.32 0.41 3.07 16 14 C -0.10 -3.20 5.93 30.64 0.18 -3.02 16 15 C -0.10 -2.58 4.96 30.67 0.15 -2.43 16 16 C 0.12 3.38 0.84 3.58 0.00 3.38 16 17 C -0.17 -3.62 8.77 71.98 0.63 -2.99 16 18 N -0.83 -22.06 8.10 -151.35 -1.23 -23.29 16 19 C 0.07 2.50 3.76 86.33 0.32 2.82 16 20 H 0.03 1.23 6.64 -2.39 -0.02 1.22 16 21 H 0.03 1.54 6.53 -2.39 -0.02 1.53 16 22 H 0.05 2.59 6.57 -2.39 -0.02 2.57 16 23 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 24 H 0.06 2.51 5.97 -2.38 -0.01 2.50 16 25 H 0.01 0.38 6.67 -2.39 -0.02 0.37 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.07 2.29 7.73 -2.39 -0.02 2.27 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.34 7.16 9.00 -89.70 -0.81 6.35 16 34 H 0.34 8.96 8.99 -89.69 -0.81 8.16 16 35 H 0.02 0.77 6.68 -2.39 -0.02 0.76 16 36 H 0.05 1.87 8.12 -2.39 -0.02 1.85 16 Total: -1.00 -62.50 272.59 -0.41 -62.91 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.55 Total: 17.55 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 3.05 Total: -22.69 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.93 Total: -104.70 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.50 -0.41 -62.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.789 kcal (2) G-P(sol) polarization free energy of solvation -62.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds