Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47891 * 2 1 4 4 C 1.50702 * 109.47300 * 239.99693 * 2 1 3 5 5 H 1.08001 * 120.00356 * 240.00329 * 4 2 1 6 6 C 1.37881 * 120.00055 * 60.00416 * 4 2 1 7 7 N 1.31513 * 119.99414 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46956 * 59.99698 * 8 6 4 10 10 H 1.48493 * 109.47194 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46672 * 299.99819 * 8 6 4 12 12 N 1.46906 * 109.46955 * 120.00370 * 2 1 3 13 13 C 1.46846 * 110.99924 * 176.04781 * 12 2 1 14 14 C 1.53036 * 109.52186 * 185.83539 * 13 12 2 15 15 C 1.53114 * 109.27864 * 300.82073 * 14 13 12 16 16 C 1.53122 * 109.16584 * 57.65433 * 15 14 13 17 17 C 1.52997 * 109.50616 * 182.40729 * 16 15 14 18 18 N 1.46897 * 109.50267 * 62.32302 * 16 15 14 19 19 C 1.46853 * 110.99094 * 300.29547 * 12 2 1 20 20 H 1.09002 * 109.46428 * 60.00212 * 1 2 3 21 21 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47212 * 300.00427 * 1 2 3 23 23 H 0.97002 * 119.99663 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.46804 * 65.81892 * 13 12 2 25 25 H 1.08996 * 109.46321 * 305.84790 * 13 12 2 26 26 H 1.08994 * 109.50753 * 180.87599 * 14 13 12 27 27 H 1.09000 * 109.50692 * 60.75896 * 14 13 12 28 28 H 1.09001 * 109.52148 * 297.74584 * 15 14 13 29 29 H 1.09000 * 109.57972 * 177.59040 * 15 14 13 30 30 H 1.09002 * 109.47153 * 299.91776 * 17 16 15 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47261 * 59.91948 * 17 16 15 33 33 H 1.00903 * 110.99825 * 60.08085 * 18 16 15 34 34 H 1.00899 * 111.00200 * 184.03899 * 18 16 15 35 35 H 1.08996 * 109.49857 * 54.16098 * 19 12 2 36 36 H 1.09005 * 109.42658 * 294.19201 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0080 9 1 1.8259 -2.5203 -4.0077 10 1 1.8262 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6926 1.1994 13 6 3.4845 -0.7946 1.1871 14 6 3.9480 -1.6449 2.3721 15 6 3.4738 -0.9965 3.6756 16 6 1.9493 -0.8577 3.6425 17 6 1.4724 -0.1560 4.9157 18 7 1.3372 -2.1904 3.5583 19 6 1.5429 -0.0307 2.4206 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7083 1.1608 -3.4844 24 1 3.9187 0.2022 1.2636 25 1 3.8082 -1.2611 0.2568 26 1 5.0361 -1.7075 2.3716 27 1 3.5253 -2.6461 2.2890 28 1 3.9272 -0.0106 3.7780 29 1 3.7644 -1.6205 4.5208 30 1 1.7633 -0.7447 5.7857 31 1 0.3871 -0.0571 4.8913 32 1 1.9269 0.8328 4.9776 33 1 1.5920 -2.7563 4.3539 34 1 0.3344 -2.1228 3.4688 35 1 0.4570 0.0574 2.3864 36 1 1.9857 0.9629 2.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -2.666905 kcal Electronic energy + Delta-G solvation = -15230.138520 eV Core-core repulsion = 12941.709949 eV Total energy + Delta-G solvation = -2288.428571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.90469 -35.27399 -32.79382 -31.56795 -28.94441 -28.33842 -26.56754 -24.79487 -23.46265 -20.95055 -19.55695 -18.47916 -16.17189 -15.40049 -15.37981 -14.46524 -14.17163 -13.73943 -13.26714 -13.03562 -12.73684 -12.40633 -12.28508 -11.82099 -11.55495 -11.32746 -11.16839 -10.87421 -10.61246 -10.35764 -10.23165 -10.05865 -9.98873 -9.73505 -9.32960 -8.73602 -8.33974 -8.13777 -6.90531 -5.93439 -3.96952 3.37341 3.41064 3.44705 4.47012 4.76759 5.01490 5.15819 5.27002 5.37645 5.51330 5.60407 5.80104 5.84545 6.04051 6.09500 6.17515 6.29914 6.35752 6.39889 6.50720 6.56875 6.92009 6.93630 7.04648 7.15691 7.28252 7.59494 7.65975 7.86700 7.90460 7.92869 8.36148 8.47144 8.76548 9.10721 9.67611 11.13466 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.008956 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.927637 B = 3125.666165 C = 3437.197479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.211 3.789 3 H -0.008 1.008 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.513 5.513 13 C 0.067 3.933 14 C -0.109 4.109 15 C -0.102 4.102 16 C 0.119 3.881 17 C -0.180 4.180 18 N -0.815 5.815 19 C 0.068 3.932 20 H 0.083 0.917 21 H 0.035 0.965 22 H 0.005 0.995 23 H 0.259 0.741 24 H 0.009 0.991 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.326 0.674 34 H 0.338 0.662 35 H 0.069 0.931 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -2.401 11.931 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.105 3.895 3 H 0.010 0.990 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.237 5.237 13 C -0.061 4.061 14 C -0.147 4.147 15 C -0.140 4.140 16 C 0.026 3.974 17 C -0.240 4.240 18 N -0.343 5.343 19 C -0.062 4.062 20 H 0.101 0.899 21 H 0.054 0.946 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.028 0.972 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.151 -2.838 11.077 11.636 hybrid contribution 0.075 0.808 0.109 0.818 sum 2.226 -2.031 11.186 11.585 Atomic orbital electron populations 1.21814 0.97879 0.99576 0.99522 1.19220 0.92233 0.91715 0.86297 0.99000 1.21142 1.30699 1.12076 0.89758 0.91872 1.24938 0.95335 0.95118 0.98977 1.69892 1.37145 1.23183 1.23334 0.86597 0.79034 0.79799 0.82180 1.20240 1.21469 1.20412 1.61884 1.08398 1.52229 1.01221 1.21906 0.89127 0.96769 0.98344 1.21518 0.98062 1.01156 0.93977 1.21555 0.94253 0.99965 0.98252 1.20845 0.94471 0.89058 0.93039 1.22641 1.01230 1.01415 0.98672 1.58618 1.14683 1.13367 1.47663 1.22033 1.00126 0.93465 0.90549 0.89889 0.94613 0.97638 0.93076 0.97239 0.89858 0.93416 0.90308 0.92733 0.93067 0.93066 0.92836 0.92466 0.86270 0.84918 0.91255 0.96407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.74 37.16 0.32 -2.93 16 2 C 0.21 5.50 2.07 -68.86 -0.14 5.36 16 3 H -0.01 -0.22 8.14 -51.93 -0.42 -0.64 16 4 C -0.50 -13.95 7.86 -34.44 -0.27 -14.22 16 5 H 0.06 1.77 6.42 -52.49 -0.34 1.43 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -26.05 11.32 55.43 0.63 -25.42 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.51 -11.35 4.37 -228.08 -1.00 -12.35 16 13 C 0.07 1.39 5.21 -3.83 -0.02 1.37 16 14 C -0.11 -1.84 5.93 -26.65 -0.16 -1.99 16 15 C -0.10 -1.51 4.96 -26.61 -0.13 -1.64 16 16 C 0.12 1.79 0.84 -131.52 -0.11 1.68 16 17 C -0.18 -2.21 8.77 37.16 0.33 -1.88 16 18 N -0.81 -11.75 8.10 0.81 0.01 -11.75 16 19 C 0.07 1.27 4.09 -3.83 -0.02 1.26 16 20 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 21 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.00 0.11 6.27 -51.93 -0.33 -0.22 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.08 1.88 6.04 -51.93 -0.31 1.56 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.33 3.92 9.00 -39.29 -0.35 3.56 16 34 H 0.34 4.74 8.99 -39.29 -0.35 4.39 16 35 H 0.07 1.33 6.00 -51.93 -0.31 1.02 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -29.01 274.63 -7.61 -36.63 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.07 Total: 3.51 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -0.29 Total: -11.50 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.36 Total: -49.52 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.01 -7.61 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.958 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds