Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47891 * 2 1 4 4 C 1.50702 * 109.47300 * 239.99693 * 2 1 3 5 5 H 1.08001 * 120.00356 * 240.00329 * 4 2 1 6 6 C 1.37881 * 120.00055 * 60.00416 * 4 2 1 7 7 N 1.31513 * 119.99414 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00329 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46956 * 59.99698 * 8 6 4 10 10 H 1.48493 * 109.47194 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46672 * 299.99819 * 8 6 4 12 12 N 1.46906 * 109.46955 * 120.00370 * 2 1 3 13 13 C 1.46846 * 110.99924 * 176.04781 * 12 2 1 14 14 C 1.53036 * 109.52186 * 185.83539 * 13 12 2 15 15 C 1.53114 * 109.27864 * 300.82073 * 14 13 12 16 16 C 1.53122 * 109.16584 * 57.65433 * 15 14 13 17 17 C 1.52997 * 109.50616 * 182.40729 * 16 15 14 18 18 N 1.46897 * 109.50267 * 62.32302 * 16 15 14 19 19 C 1.46853 * 110.99094 * 300.29547 * 12 2 1 20 20 H 1.09002 * 109.46428 * 60.00212 * 1 2 3 21 21 H 1.08996 * 109.47318 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47212 * 300.00427 * 1 2 3 23 23 H 0.97002 * 119.99663 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.46804 * 65.81892 * 13 12 2 25 25 H 1.08996 * 109.46321 * 305.84790 * 13 12 2 26 26 H 1.08994 * 109.50753 * 180.87599 * 14 13 12 27 27 H 1.09000 * 109.50692 * 60.75896 * 14 13 12 28 28 H 1.09001 * 109.52148 * 297.74584 * 15 14 13 29 29 H 1.09000 * 109.57972 * 177.59040 * 15 14 13 30 30 H 1.09002 * 109.47153 * 299.91776 * 17 16 15 31 31 H 1.09001 * 109.46832 * 179.97438 * 17 16 15 32 32 H 1.09004 * 109.47261 * 59.91948 * 17 16 15 33 33 H 1.00903 * 110.99825 * 60.08085 * 18 16 15 34 34 H 1.00899 * 111.00200 * 184.03899 * 18 16 15 35 35 H 1.08996 * 109.49857 * 54.16098 * 19 12 2 36 36 H 1.09005 * 109.42658 * 294.19201 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0080 9 1 1.8259 -2.5203 -4.0077 10 1 1.8262 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 7 2.0196 -0.6926 1.1994 13 6 3.4845 -0.7946 1.1871 14 6 3.9480 -1.6449 2.3721 15 6 3.4738 -0.9965 3.6756 16 6 1.9493 -0.8577 3.6425 17 6 1.4724 -0.1560 4.9157 18 7 1.3372 -2.1904 3.5583 19 6 1.5429 -0.0307 2.4206 20 1 -0.3632 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 0.7083 1.1608 -3.4844 24 1 3.9187 0.2022 1.2636 25 1 3.8082 -1.2611 0.2568 26 1 5.0361 -1.7075 2.3716 27 1 3.5253 -2.6461 2.2890 28 1 3.9272 -0.0106 3.7780 29 1 3.7644 -1.6205 4.5208 30 1 1.7633 -0.7447 5.7857 31 1 0.3871 -0.0571 4.8913 32 1 1.9269 0.8328 4.9776 33 1 1.5920 -2.7563 4.3539 34 1 0.3344 -2.1228 3.4688 35 1 0.4570 0.0574 2.3864 36 1 1.9857 0.9629 2.4909 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -23.487977 kcal Electronic energy + Delta-G solvation = -15231.041389 eV Core-core repulsion = 12941.709949 eV Total energy + Delta-G solvation = -2289.331441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36397 -36.95179 -34.59190 -33.25393 -30.27610 -30.05029 -28.09661 -26.63808 -25.10093 -22.41846 -21.47118 -19.83880 -18.27925 -17.18213 -16.60982 -16.10299 -15.81053 -15.23756 -14.85263 -14.54475 -14.33616 -13.88730 -13.54960 -13.41926 -13.03872 -12.86359 -12.83804 -12.63961 -12.37574 -12.20620 -12.05806 -11.93986 -11.56964 -11.40506 -10.84875 -10.75475 -10.47939 -9.24221 -8.73856 -8.09623 -6.20965 1.41891 1.44386 1.51850 2.43351 3.17594 3.36308 3.77638 3.87339 4.03911 4.24971 4.36472 4.53382 4.63581 4.73970 4.78917 4.81390 4.90267 4.90411 5.02630 5.06065 5.09566 5.18231 5.26866 5.30965 5.39938 5.53568 5.64080 5.76009 5.84177 6.29481 6.50910 6.52903 6.87611 6.91282 6.96538 7.48114 8.96344 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.008956 C = 0.008144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.927637 B = 3125.666165 C = 3437.197479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.214 3.786 3 H -0.049 1.049 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 N -0.515 5.515 13 C 0.065 3.935 14 C -0.099 4.099 15 C -0.100 4.100 16 C 0.125 3.875 17 C -0.171 4.171 18 N -0.826 5.826 19 C 0.064 3.936 20 H 0.057 0.943 21 H 0.031 0.969 22 H 0.027 0.973 23 H 0.261 0.739 24 H -0.002 1.002 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.343 0.657 34 H 0.340 0.660 35 H 0.063 0.937 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 -3.519 13.435 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H -0.031 1.031 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.239 5.239 13 C -0.063 4.063 14 C -0.137 4.137 15 C -0.138 4.138 16 C 0.031 3.969 17 C -0.231 4.231 18 N -0.357 5.357 19 C -0.065 4.065 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.690 -3.968 12.611 13.492 hybrid contribution -0.088 1.181 -0.340 1.232 sum 2.602 -2.787 12.271 12.850 Atomic orbital electron populations 1.21599 0.97295 0.99099 0.99343 1.19048 0.92679 0.89660 0.87921 1.03114 1.21395 1.30883 1.12080 0.90990 0.92452 1.25741 0.95462 0.95817 1.01950 1.70024 1.37924 1.24320 1.24012 0.85576 0.78679 0.78709 0.78463 1.19678 1.20861 1.19727 1.61866 1.09276 1.51701 1.01086 1.21934 0.88322 0.96742 0.99306 1.21425 0.99293 0.99771 0.93221 1.21570 0.93839 1.00518 0.97890 1.20737 0.94869 0.89096 0.92164 1.22532 1.01418 1.01437 0.97717 1.58542 1.14912 1.13289 1.48982 1.22164 0.99607 0.93756 0.90931 0.92395 0.94986 0.95447 0.93003 0.98398 0.92481 0.91316 0.91075 0.92485 0.90015 0.90670 0.92514 0.92448 0.84330 0.84717 0.91839 0.97468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.90 8.74 71.98 0.63 -5.27 16 2 C 0.21 11.49 2.07 44.17 0.09 11.58 16 3 H -0.05 -2.94 8.14 -2.39 -0.02 -2.96 16 4 C -0.52 -29.57 7.86 25.60 0.20 -29.37 16 5 H 0.06 3.29 6.42 -2.91 -0.02 3.27 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.84 11.32 21.45 0.24 -54.59 16 8 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 N -0.52 -23.06 4.37 -875.50 -3.83 -26.88 16 13 C 0.07 2.73 5.21 86.33 0.45 3.18 16 14 C -0.10 -3.16 5.93 30.64 0.18 -2.98 16 15 C -0.10 -2.65 4.96 30.67 0.15 -2.50 16 16 C 0.12 3.44 0.84 3.58 0.00 3.44 16 17 C -0.17 -3.64 8.77 71.98 0.63 -3.01 16 18 N -0.83 -21.73 8.10 -151.36 -1.23 -22.96 16 19 C 0.06 2.40 4.09 86.33 0.35 2.75 16 20 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.23 6.27 -2.39 -0.02 1.21 16 23 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 25 H 0.06 2.65 6.04 -2.39 -0.01 2.63 16 26 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 27 H 0.07 2.40 7.73 -2.39 -0.02 2.38 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.34 7.04 9.00 -89.69 -0.81 6.23 16 34 H 0.34 8.80 8.99 -89.69 -0.81 7.99 16 35 H 0.06 2.40 6.00 -2.39 -0.01 2.39 16 36 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -63.30 274.63 -0.19 -63.49 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.55 Total: 15.12 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 3.14 Total: -21.24 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.81 Total: -104.44 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.30 -0.19 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.003 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds