Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86798 * 119.99943 * 2 1 4 4 H 1.48500 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47035 * 299.99551 * 3 2 1 6 6 H 1.48497 * 109.47461 * 59.99726 * 3 2 1 7 7 C 1.38620 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99529 * 180.02562 * 7 2 1 9 9 O 1.34796 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.35812 * 116.99893 * 185.06077 * 9 7 2 11 11 C 1.38884 * 120.00021 * 354.40049 * 10 9 7 12 12 C 1.38011 * 120.01647 * 179.76378 * 11 10 9 13 13 C 1.38970 * 120.01848 * 0.50631 * 12 11 10 14 14 N 1.39772 * 120.00095 * 179.72075 * 13 12 11 15 15 C 1.38926 * 119.99828 * 359.74631 * 13 12 11 16 16 C 1.38132 * 119.97961 * 359.97438 * 15 13 12 17 17 Cl 1.73595 * 120.00477 * 179.97438 * 16 15 13 18 18 H 0.97008 * 120.00264 * 0.02562 * 1 2 3 19 19 H 1.08001 * 119.99091 * 359.97438 * 11 10 9 20 20 H 1.08001 * 119.98937 * 180.23312 * 12 11 10 21 21 H 0.96998 * 119.99879 * 180.02562 * 14 13 12 22 22 H 0.96995 * 120.00420 * 0.02710 * 14 13 12 23 23 H 1.07997 * 120.00540 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3464 0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8911 2.3965 1.2124 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3348 -2.3679 0.0005 10 6 2.0704 -3.5045 0.1078 11 6 3.4575 -3.4379 0.0940 12 6 4.2054 -4.5922 0.2079 13 6 3.5707 -5.8229 0.3259 14 7 4.3284 -6.9923 0.4354 15 6 2.1832 -5.8909 0.3346 16 6 1.4348 -4.7350 0.2264 17 17 -0.2991 -4.8192 0.2365 18 1 -0.4851 0.8401 -0.0004 19 1 3.9512 -2.4822 -0.0026 20 1 5.2841 -4.5396 0.2008 21 1 3.8854 -7.8514 0.5174 22 1 5.2972 -6.9449 0.4293 23 1 1.6899 -6.8472 0.4267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019478951.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -31.077813 kcal Electronic energy + Delta-G solvation = -11653.176487 eV Core-core repulsion = 9299.007145 eV Total energy + Delta-G solvation = -2354.169342 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.74247 -38.56149 -37.22026 -34.71683 -33.83025 -31.58977 -28.76925 -27.05106 -23.79729 -22.71228 -19.87282 -18.99254 -17.72296 -17.28443 -16.23645 -15.76022 -15.59648 -15.36946 -14.66340 -14.57327 -13.78833 -13.48070 -13.16557 -12.78223 -12.67448 -12.49018 -12.07466 -11.70112 -11.20444 -11.02919 -10.35679 -9.66309 -8.37542 -8.06058 -6.01460 0.36784 0.81308 1.38746 1.45701 1.47374 1.56850 2.22789 2.84125 3.17247 3.21106 3.56885 4.07854 4.26094 4.52980 4.81709 4.95135 5.11260 5.27220 5.43064 5.61581 5.87250 6.06503 6.75123 7.06543 7.23124 7.88640 8.85744 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.036649 B = 0.010072 C = 0.007929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.822571 B = 2779.181303 C = 3530.657690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 1.016 2.984 4 H -0.249 1.249 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.410 4.410 8 H 0.103 0.897 9 O -0.220 6.220 10 C 0.069 3.931 11 C -0.183 4.183 12 C -0.140 4.140 13 C 0.163 3.837 14 N -0.866 5.866 15 C -0.147 4.147 16 C -0.075 4.075 17 Cl -0.085 7.085 18 H 0.269 0.731 19 H 0.132 0.868 20 H 0.151 0.849 21 H 0.405 0.595 22 H 0.407 0.593 23 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 -10.159 0.843 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.836 3.164 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.120 0.880 9 O -0.126 6.126 10 C 0.017 3.983 11 C -0.203 4.203 12 C -0.162 4.162 13 C 0.059 3.941 14 N -0.410 5.410 15 C -0.170 4.170 16 C -0.103 4.103 17 Cl -0.057 7.057 18 H 0.078 0.922 19 H 0.149 0.851 20 H 0.169 0.831 21 H 0.234 0.766 22 H 0.237 0.763 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.716 -9.952 0.818 13.255 hybrid contribution -0.086 0.590 -0.003 0.597 sum 8.630 -9.362 0.815 12.759 Atomic orbital electron populations 1.70239 1.07980 1.28312 1.49322 1.26512 0.96773 1.02572 0.96316 0.84554 0.78388 0.75173 0.78242 1.17227 1.19711 1.19756 1.21851 0.92510 0.81624 1.52630 0.87981 1.84029 1.34736 1.11818 1.82064 1.19429 0.91529 0.87405 0.99907 1.21066 0.91851 1.00166 1.07215 1.20682 1.00392 0.89973 1.05199 1.17330 0.89703 0.88176 0.98911 1.42044 1.08439 1.04743 1.85819 1.20252 0.92249 0.96330 1.08212 1.20045 0.83934 0.92814 1.13541 1.98293 1.11449 1.98595 1.97339 0.92198 0.85090 0.83148 0.76568 0.76302 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.29 13.67 21.61 0.30 -56.99 14 2 C -0.02 -1.41 5.49 84.82 0.47 -0.94 14 3 Si 1.02 43.16 29.55 68.60 2.03 45.19 14 4 H -0.25 -9.62 7.11 99.48 0.71 -8.92 14 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 14 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 14 7 C -0.41 -23.75 9.48 67.91 0.64 -23.11 14 8 H 0.10 5.35 5.20 -2.91 -0.02 5.34 14 9 O -0.22 -13.17 9.21 -23.08 -0.21 -13.38 14 10 C 0.07 3.42 6.64 22.61 0.15 3.57 14 11 C -0.18 -7.68 9.16 22.37 0.20 -7.48 14 12 C -0.14 -4.50 9.89 22.39 0.22 -4.28 14 13 C 0.16 4.79 6.76 38.22 0.26 5.04 14 14 N -0.87 -16.33 9.09 -51.26 -0.47 -16.79 14 15 C -0.15 -4.98 9.67 22.41 0.22 -4.76 14 16 C -0.08 -3.28 6.33 22.43 0.14 -3.13 14 17 Cl -0.09 -3.72 28.50 -2.72 -0.08 -3.80 14 18 H 0.27 15.40 8.31 -92.70 -0.77 14.63 14 19 H 0.13 5.50 5.63 -2.91 -0.02 5.48 14 20 H 0.15 3.67 8.06 -2.91 -0.02 3.65 14 21 H 0.40 5.94 8.84 -92.71 -0.82 5.12 14 22 H 0.41 5.72 8.84 -92.71 -0.82 4.90 14 23 H 0.15 4.13 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -71.01 227.72 3.50 -67.51 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.37 Total: 13.35 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 2.30 Total: -35.08 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -0.17 Total: -73.78 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.21 Total: -13.38 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -3.72 SS G_CDS: -0.08 Total: -3.80 kcal Total: -71.01 3.50 -67.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019478951.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.434 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds