Wall clock time and date at job start Mon Mar 30 2020 02:48:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31688 * 1
3 3 Si 1.86803 * 119.99934 * 2 1
4 4 H 1.48504 * 109.47040 * 270.00351 * 3 2 1
5 5 H 1.48497 * 109.47005 * 29.99984 * 3 2 1
6 6 H 1.48496 * 109.47270 * 150.00292 * 3 2 1
7 7 C 1.38645 * 120.00170 * 180.02562 * 2 1 3
8 8 H 1.08006 * 120.00027 * 179.97438 * 7 2 1
9 9 S 1.76201 * 119.99791 * 359.97438 * 7 2 1
10 10 C 1.76199 * 99.99845 * 185.67520 * 9 7 2
11 11 C 1.38958 * 120.09989 * 6.92857 * 10 9 7
12 12 C 1.38098 * 120.00226 * 179.69654 * 11 10 9
13 13 C 1.38604 * 120.20849 * 0.60812 * 12 11 10
14 14 F 1.35099 * 119.89772 * 179.69981 * 13 12 11
15 15 C 1.38421 * 120.19890 * 359.67154 * 13 12 11
16 16 C 1.38685 * 119.99215 * 0.02562 * 15 13 12
17 17 N 1.39714 * 120.09857 * 180.02562 * 16 15 13
18 18 H 0.97000 * 119.99710 * 0.02562 * 1 2 3
19 19 H 1.07999 * 119.99761 * 359.97438 * 11 10 9
20 20 H 1.08008 * 119.89498 * 180.30442 * 12 11 10
21 21 H 1.07997 * 120.00396 * 180.02562 * 15 13 12
22 22 H 0.97007 * 119.99610 * 179.97438 * 17 16 15
23 23 H 0.96991 * 120.00585 * 359.97438 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3169 0.0000 0.0000
3 14 2.2509 1.6178 0.0000
4 1 2.4983 2.0465 -1.4001
5 1 1.4483 2.6527 0.7000
6 1 3.5484 1.4402 0.7000
7 6 2.0101 -1.2007 -0.0005
8 1 3.0902 -1.2007 -0.0010
9 16 1.1291 -2.7266 -0.0005
10 6 2.4716 -3.8550 0.1703
11 6 3.7564 -3.3794 0.4026
12 6 4.8061 -4.2658 0.5424
13 6 4.5851 -5.6302 0.4393
14 9 5.6176 -6.4915 0.5711
15 6 3.3097 -6.1130 0.2023
16 6 2.2485 -5.2306 0.0667
17 7 0.9601 -5.7155 -0.1720
18 1 -0.4850 0.8401 -0.0004
19 1 3.9334 -2.3167 0.4782
20 1 5.8033 -3.8944 0.7278
21 1 3.1410 -7.1768 0.1229
22 1 0.2188 -5.0969 -0.2662
23 1 0.8068 -6.6705 -0.2436
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037195220.mol2 23
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:48:25
Heat of formation + Delta-G solvation = -29.933316 kcal
Electronic energy + Delta-G solvation = -11417.725015 eV
Core-core repulsion = 9078.021798 eV
Total energy + Delta-G solvation = -2339.703217 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 213.032 amu
Computer time = 0.10 seconds
Orbital eigenvalues (eV)
-48.28296 -38.32220 -33.90027 -32.69631 -29.99712 -28.02612 -25.83783 -22.26919
-21.70929 -18.24541 -17.08496 -16.62221 -15.97600 -15.12484 -14.99551 -14.61501
-14.49010 -13.35719 -13.15944 -12.53685 -12.50253 -12.14854 -11.21347 -11.11532
-11.01632 -10.38631 -10.02818 -9.91809 -9.46906 -8.73401 -8.57778 -7.45088
-6.50638 -6.33596 -4.18717 1.83298 2.10943 3.07342 3.11741 3.18601
3.37093 3.99911 4.27708 4.30604 4.91756 5.04552 5.13664 5.42419
5.65235 6.02279 6.24932 6.49944 6.62840 6.84613 7.05565 7.40710
7.50649 7.93913 8.14309 8.22985 8.97951 10.56864
Molecular weight = 213.03amu
Principal moments of inertia in cm(-1)
A = 0.043818 B = 0.009239 C = 0.007662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 638.851863 B = 3029.802179 C = 3653.412982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.866 5.866
2 C 0.076 3.924
3 Si 0.924 3.076
4 H -0.274 1.274
5 H -0.280 1.280
6 H -0.268 1.268
7 C -0.543 4.543
8 H 0.093 0.907
9 S 0.029 5.971
10 C -0.159 4.159
11 C -0.079 4.079
12 C -0.187 4.187
13 C 0.094 3.906
14 F -0.155 7.155
15 C -0.222 4.222
16 C 0.232 3.768
17 N -0.871 5.871
18 H 0.273 0.727
19 H 0.144 0.856
20 H 0.120 0.880
21 H 0.122 0.878
22 H 0.404 0.596
23 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.532 -7.165 0.131 7.989
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.500 5.500
2 C -0.134 4.134
3 Si 0.750 3.250
4 H -0.199 1.199
5 H -0.205 1.205
6 H -0.192 1.192
7 C -0.690 4.690
8 H 0.111 0.889
9 S 0.282 5.718
10 C -0.277 4.277
11 C -0.107 4.107
12 C -0.210 4.210
13 C 0.069 3.931
14 F -0.134 7.134
15 C -0.249 4.249
16 C 0.121 3.879
17 N -0.412 5.412
18 H 0.083 0.917
19 H 0.162 0.838
20 H 0.138 0.862
21 H 0.140 0.860
22 H 0.234 0.766
23 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges 2.027 -7.047 0.024 7.333
hybrid contribution 1.700 0.867 0.082 1.910
sum 3.727 -6.181 0.106 7.218
Atomic orbital electron populations
1.70015 1.06065 1.28197 1.45744 1.25084 0.95167 0.99605 0.93522
0.86057 0.79574 0.80724 0.78688 1.19939 1.20535 1.19217 1.23234
0.95831 0.90625 1.59286 0.88911 1.83016 1.06026 0.97495 1.85276
1.22271 1.01009 0.95696 1.08763 1.21099 0.90647 1.00432 0.98477
1.20736 0.99954 0.91136 1.09127 1.17191 0.83556 0.87004 1.05335
1.91396 1.57842 1.70179 1.93943 1.20101 0.91162 0.98862 1.14756
1.16979 0.85325 0.90562 0.95025 1.42400 1.06560 1.09482 1.82748
0.91739 0.83844 0.86203 0.86017 0.76603 0.78008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.00 13.22 55.48 0.73 -23.27 14
2 C 0.08 2.02 5.49 -17.46 -0.10 1.92 14
3 Si 0.92 20.24 29.55 -169.99 -5.02 15.22 14
4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 14
5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14
6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14
7 C -0.54 -14.38 8.99 30.88 0.28 -14.11 14
8 H 0.09 2.35 4.97 -52.48 -0.26 2.09 14
9 S 0.03 0.71 20.18 -107.50 -2.17 -1.45 14
10 C -0.16 -3.44 6.12 -38.75 -0.24 -3.68 14
11 C -0.08 -1.65 9.22 -39.37 -0.36 -2.02 14
12 C -0.19 -3.48 10.01 -39.50 -0.40 -3.88 14
13 C 0.09 1.71 7.30 -39.38 -0.29 1.42 14
14 F -0.15 -2.69 17.26 2.25 0.04 -2.65 14
15 C -0.22 -3.88 9.86 -39.35 -0.39 -4.27 14
16 C 0.23 4.36 6.77 -83.54 -0.57 3.80 14
17 N -0.87 -13.57 9.03 32.54 0.29 -13.28 14
18 H 0.27 7.05 8.31 -40.82 -0.34 6.71 14
19 H 0.14 3.08 5.02 -52.49 -0.26 2.82 14
20 H 0.12 1.95 8.06 -52.48 -0.42 1.53 14
21 H 0.12 1.79 8.06 -52.49 -0.42 1.37 14
22 H 0.40 6.52 7.38 -40.82 -0.30 6.22 14
23 H 0.39 4.72 8.84 -40.82 -0.36 4.36 14
LS Contribution 224.96 15.07 3.39 3.39
Total: -1.00 -28.28 224.96 -5.96 -34.24
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -1.17 Total: 8.61 kcal
Atomic # 6 Polarization: -18.76 SS G_CDS: -2.05 Total: -20.81 kcal
Atomic # 7 Polarization: -37.57 SS G_CDS: 1.03 Total: -36.54 kcal
Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal
Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal
Atomic # 16 Polarization: 0.71 SS G_CDS: -2.17 Total: -1.45 kcal
Total LS contribution 3.39 Total: 3.39 kcal
Total: -28.28 -5.96 -34.24 kcal
The number of atoms in the molecule is 23
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037195220.mol2 23
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.309 kcal
(2) G-P(sol) polarization free energy of solvation -28.285 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.10 seconds