Wall clock time and date at job start Mon Mar 30 2020 02:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47840 * 110.99958 * 2 1 4 4 C 1.54907 * 104.79710 * 146.36294 * 3 2 1 5 5 C 1.55147 * 101.65106 * 322.93479 * 4 3 2 6 6 H 1.08999 * 110.85322 * 277.19528 * 5 4 3 7 7 C 1.52997 * 110.70406 * 154.03329 * 5 4 3 8 8 N 1.46900 * 109.47220 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00559 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47515 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.47437 * 111.00220 * 120.84803 * 2 1 3 20 20 H 1.08998 * 109.47356 * 299.15397 * 1 2 3 21 21 H 1.09006 * 109.47194 * 59.15402 * 1 2 3 22 22 H 1.09003 * 109.47147 * 179.14918 * 1 2 3 23 23 H 1.09002 * 110.37612 * 265.19435 * 3 2 1 24 24 H 1.09004 * 110.37578 * 27.42719 * 3 2 1 25 25 H 1.09001 * 110.99599 * 204.84287 * 4 3 2 26 26 H 1.09004 * 110.98729 * 81.02058 * 4 3 2 27 27 H 1.09003 * 109.46989 * 59.94693 * 7 5 4 28 28 H 1.09005 * 109.47424 * 299.94469 * 7 5 4 29 29 H 1.00905 * 110.99607 * 303.95664 * 8 7 5 30 30 H 1.09002 * 109.47104 * 59.99767 * 9 8 7 31 31 H 1.08998 * 109.46828 * 300.00600 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 33 33 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 34 34 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.89116 * 117.33652 * 19 2 1 36 36 H 1.09000 * 109.88901 * 356.14595 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2820 1.9315 6 1 2.3753 0.7722 2.7411 7 6 4.1569 -0.4339 2.4679 8 7 3.7585 -1.3918 3.5080 9 6 4.9272 -2.0992 4.0479 10 6 4.4732 -3.0860 5.1254 11 6 5.6721 -3.8122 5.6788 12 1 6.6593 -3.5916 5.3003 13 6 5.5089 -4.7574 6.6692 14 7 6.5553 -5.3907 7.1525 15 14 3.8017 -5.1384 7.3245 16 1 3.1973 -6.2337 6.5241 17 1 3.8993 -5.5595 8.7451 18 1 2.9511 -3.9253 7.2250 19 6 1.9974 -0.7058 1.1817 20 1 -0.3634 0.5006 0.8974 21 1 -0.3634 0.5269 -0.8823 22 1 -0.3633 -1.0276 -0.0153 23 1 2.2147 1.7039 -1.0182 24 1 1.2881 2.0596 0.4707 25 1 3.5495 2.2720 1.2641 26 1 4.1302 0.9281 0.2242 27 1 4.8441 0.2984 2.8918 28 1 4.6497 -0.9661 1.6541 29 1 3.2424 -0.9328 4.2436 30 1 5.6191 -1.3782 4.4833 31 1 5.4259 -2.6422 3.2452 32 1 3.7815 -3.8069 4.6896 33 1 3.9742 -2.5432 5.9282 34 1 6.4405 -6.0560 7.8490 35 1 2.5698 -1.5785 0.8672 36 1 1.1756 -1.0121 1.8289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037485058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:15 Heat of formation + Delta-G solvation = -8.155966 kcal Electronic energy + Delta-G solvation = -14002.567326 eV Core-core repulsion = 11713.900731 eV Total energy + Delta-G solvation = -2288.666595 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21097 -36.05523 -33.29662 -32.12504 -30.17768 -28.59154 -26.28797 -24.46204 -22.69482 -21.18733 -20.56363 -19.89199 -16.76710 -16.30983 -15.63371 -15.13074 -14.45395 -14.17861 -13.78800 -13.58196 -13.37277 -13.08843 -12.62156 -12.43097 -11.92435 -11.66640 -11.41198 -11.29732 -11.15664 -11.07041 -10.81117 -10.67512 -10.12663 -9.78563 -9.67805 -9.21668 -8.52666 -8.41327 -7.93031 -6.03478 -4.01755 3.33622 3.40248 3.44927 3.94710 4.37621 4.47109 4.58303 4.77717 4.95019 5.20080 5.26303 5.29707 5.31240 5.42238 5.48701 5.59541 5.65265 5.70984 5.81936 5.87860 5.98739 6.13613 6.21941 6.28332 6.37344 6.78902 6.86376 6.97086 7.13921 7.39604 7.60976 7.76177 7.91327 8.54325 9.00716 9.58993 11.09954 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053050 B = 0.005230 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.678000 B = 5352.257115 C = 5726.511728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.041 3.959 4 C -0.125 4.125 5 C -0.106 4.106 6 H 0.071 0.929 7 C 0.070 3.930 8 N -0.694 5.694 9 C 0.073 3.927 10 C -0.010 4.010 11 C -0.521 4.521 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.883 3.117 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.266 1.266 19 C 0.057 3.943 20 H 0.025 0.975 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.333 0.667 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.021 0.979 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.085 0.915 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 13.585 -12.216 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.086 4.086 4 C -0.163 4.163 5 C -0.126 4.126 6 H 0.089 0.911 7 C -0.060 4.060 8 N -0.324 5.324 9 C -0.055 4.055 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.071 4.071 20 H 0.043 0.957 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.039 0.961 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.460 12.677 -12.993 20.951 hybrid contribution -0.695 0.808 1.753 2.052 sum -11.155 13.485 -11.240 20.799 Atomic orbital electron populations 1.22523 0.88039 1.02071 1.00168 1.63620 1.07701 1.14078 1.41001 1.23032 0.95610 0.89727 1.00255 1.22742 0.97758 0.99053 0.96793 1.22400 0.97035 0.95898 0.97258 0.91069 1.21902 0.94742 0.93580 0.95814 1.60616 1.25608 1.30307 1.15916 1.21949 0.89959 0.95803 0.97753 1.19545 0.97433 0.94514 0.93269 1.21083 0.93923 1.20805 1.20184 0.91127 1.25010 0.96762 0.95540 0.96122 1.69919 1.29548 1.26293 1.28572 0.86725 0.85142 0.79120 0.77955 1.20215 1.21513 1.19048 1.22803 0.97808 0.97182 0.89262 0.95680 0.91762 0.91326 0.90474 0.93873 0.91005 0.90368 0.95628 0.90902 0.85027 0.96073 0.91724 0.96088 0.96940 0.92734 0.89638 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 60.07 0.55 0.75 16 2 N -0.54 -6.23 5.44 -239.52 -1.30 -7.54 16 3 C 0.04 0.41 6.73 -2.30 -0.02 0.39 16 4 C -0.12 -1.24 6.52 -24.59 -0.16 -1.40 16 5 C -0.11 -1.24 3.13 -88.80 -0.28 -1.52 16 6 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 7 C 0.07 0.96 5.00 -3.83 -0.02 0.94 16 8 N -0.69 -11.62 6.31 -113.78 -0.72 -12.34 16 9 C 0.07 1.50 5.62 -3.83 -0.02 1.48 16 10 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 11 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 15 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C 0.06 0.71 6.31 -2.84 -0.02 0.69 16 20 H 0.02 0.23 8.10 -51.93 -0.42 -0.19 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.40 7.78 -51.93 -0.40 -0.01 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 27 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 29 H 0.33 5.30 8.73 -39.29 -0.34 4.96 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 33 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.09 1.21 7.77 -51.93 -0.40 0.81 16 36 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 LS Contribution 288.08 15.07 4.34 4.34 Total: -1.00 -30.60 288.08 -8.63 -39.22 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.54 Total: -1.08 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.52 Total: -12.60 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.25 Total: -47.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.60 -8.63 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.067 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds