Wall clock time and date at job start Mon Mar 30 2020 02:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47840 * 110.99958 * 2 1 4 4 C 1.54907 * 104.79710 * 146.36294 * 3 2 1 5 5 C 1.55147 * 101.65106 * 322.93479 * 4 3 2 6 6 H 1.08999 * 110.85322 * 277.19528 * 5 4 3 7 7 C 1.52997 * 110.70406 * 154.03329 * 5 4 3 8 8 N 1.46900 * 109.47220 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00559 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47515 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99594 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99875 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47061 * 90.00257 * 15 13 11 17 17 H 1.48497 * 109.46906 * 209.99430 * 15 13 11 18 18 H 1.48498 * 109.47403 * 329.99876 * 15 13 11 19 19 C 1.47437 * 111.00220 * 120.84803 * 2 1 3 20 20 H 1.08998 * 109.47356 * 299.15397 * 1 2 3 21 21 H 1.09006 * 109.47194 * 59.15402 * 1 2 3 22 22 H 1.09003 * 109.47147 * 179.14918 * 1 2 3 23 23 H 1.09002 * 110.37612 * 265.19435 * 3 2 1 24 24 H 1.09004 * 110.37578 * 27.42719 * 3 2 1 25 25 H 1.09001 * 110.99599 * 204.84287 * 4 3 2 26 26 H 1.09004 * 110.98729 * 81.02058 * 4 3 2 27 27 H 1.09003 * 109.46989 * 59.94693 * 7 5 4 28 28 H 1.09005 * 109.47424 * 299.94469 * 7 5 4 29 29 H 1.00905 * 110.99607 * 303.95664 * 8 7 5 30 30 H 1.09002 * 109.47104 * 59.99767 * 9 8 7 31 31 H 1.08998 * 109.46828 * 300.00600 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 33 33 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 34 34 H 0.97002 * 119.99739 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.89116 * 117.33652 * 19 2 1 36 36 H 1.09000 * 109.88901 * 356.14595 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2820 1.9315 6 1 2.3753 0.7722 2.7411 7 6 4.1569 -0.4339 2.4679 8 7 3.7585 -1.3918 3.5080 9 6 4.9272 -2.0992 4.0479 10 6 4.4732 -3.0860 5.1254 11 6 5.6721 -3.8122 5.6788 12 1 6.6593 -3.5916 5.3003 13 6 5.5089 -4.7574 6.6692 14 7 6.5553 -5.3907 7.1525 15 14 3.8017 -5.1384 7.3245 16 1 3.1973 -6.2337 6.5241 17 1 3.8993 -5.5595 8.7451 18 1 2.9511 -3.9253 7.2250 19 6 1.9974 -0.7058 1.1817 20 1 -0.3634 0.5006 0.8974 21 1 -0.3634 0.5269 -0.8823 22 1 -0.3633 -1.0276 -0.0153 23 1 2.2147 1.7039 -1.0182 24 1 1.2881 2.0596 0.4707 25 1 3.5495 2.2720 1.2641 26 1 4.1302 0.9281 0.2242 27 1 4.8441 0.2984 2.8918 28 1 4.6497 -0.9661 1.6541 29 1 3.2424 -0.9328 4.2436 30 1 5.6191 -1.3782 4.4833 31 1 5.4259 -2.6422 3.2452 32 1 3.7815 -3.8069 4.6896 33 1 3.9742 -2.5432 5.9282 34 1 6.4405 -6.0560 7.8490 35 1 2.5698 -1.5785 0.8672 36 1 1.1756 -1.0121 1.8289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037485058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:15 Heat of formation + Delta-G solvation = -30.697939 kcal Electronic energy + Delta-G solvation = -14003.544820 eV Core-core repulsion = 11713.900731 eV Total energy + Delta-G solvation = -2289.644088 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.11214 -37.46748 -35.13924 -33.55682 -31.64316 -29.78132 -27.38239 -25.94522 -24.02787 -22.44797 -21.82341 -21.04636 -18.96084 -17.23696 -16.80308 -16.31846 -16.26953 -15.30004 -15.06225 -15.01552 -14.58255 -14.43144 -14.16663 -13.51119 -13.34861 -12.94768 -12.80490 -12.48014 -12.31425 -12.20307 -12.09648 -11.78033 -11.62381 -11.59220 -11.42213 -11.37692 -10.77621 -9.33198 -9.23849 -8.30604 -6.35388 1.37423 1.38434 1.51115 2.36409 3.05096 3.12718 3.22254 3.70943 3.84480 3.94280 4.36147 4.42261 4.45455 4.47519 4.52850 4.56645 4.59896 4.72595 4.79164 4.87486 4.95717 4.99365 5.02590 5.12903 5.18073 5.29313 5.40789 5.48499 5.62569 6.01617 6.13393 6.16387 6.24953 6.53139 6.73468 7.29672 8.86230 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053050 B = 0.005230 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.678000 B = 5352.257115 C = 5726.511728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.556 5.556 3 C 0.042 3.958 4 C -0.120 4.120 5 C -0.100 4.100 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.693 5.693 9 C 0.087 3.913 10 C -0.004 4.004 11 C -0.536 4.536 12 H 0.031 0.969 13 C 0.005 3.995 14 N -0.951 5.951 15 Si 0.956 3.044 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.246 1.246 19 C 0.059 3.941 20 H 0.029 0.971 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.053 0.947 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.341 0.659 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 14.976 -12.584 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.280 5.280 3 C -0.085 4.085 4 C -0.158 4.158 5 C -0.119 4.119 6 H 0.097 0.903 7 C -0.057 4.057 8 N -0.324 5.324 9 C -0.042 4.042 10 C -0.042 4.042 11 C -0.574 4.574 12 H 0.049 0.951 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.170 1.170 19 C -0.068 4.068 20 H 0.047 0.953 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.105 0.895 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.159 0.841 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.616 14.096 -13.383 23.172 hybrid contribution 0.053 0.394 1.804 1.847 sum -12.564 14.490 -11.579 22.403 Atomic orbital electron populations 1.22554 0.86988 1.02238 1.01012 1.63592 1.08844 1.15176 1.40408 1.23092 0.95547 0.88953 1.00942 1.22738 0.97806 0.99226 0.96057 1.22329 0.95797 0.95965 0.97850 0.90346 1.21926 0.96032 0.93093 0.94638 1.60508 1.23929 1.31561 1.16379 1.21612 0.91006 0.95251 0.96344 1.19433 0.95379 0.94965 0.94395 1.21429 0.94066 1.21526 1.20415 0.95070 1.26013 1.01492 0.95252 0.96397 1.70068 1.32335 1.27260 1.29520 0.85579 0.79485 0.79714 0.77342 1.19310 1.20879 1.16986 1.22678 0.97560 0.96912 0.89674 0.95291 0.90371 0.91616 0.89515 0.92829 0.89246 0.90714 0.94939 0.91616 0.84122 0.96532 0.92791 0.96073 0.96152 0.92407 0.91834 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.12 127.69 1.16 1.52 16 2 N -0.56 -11.80 5.44 -911.71 -4.96 -16.76 16 3 C 0.04 0.71 6.73 86.77 0.58 1.30 16 4 C -0.12 -2.07 6.52 31.98 0.21 -1.86 16 5 C -0.10 -2.13 3.13 -9.61 -0.03 -2.16 16 6 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 7 C 0.07 1.89 5.00 86.30 0.43 2.33 16 8 N -0.69 -22.20 6.31 -513.90 -3.24 -25.44 16 9 C 0.09 3.51 5.62 86.30 0.49 3.99 16 10 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 11 C -0.54 -31.61 9.66 25.60 0.25 -31.36 16 12 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 13 C 0.01 0.32 5.47 84.66 0.46 0.78 16 14 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 15 Si 0.96 45.03 27.47 68.60 1.88 46.92 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 19 C 0.06 1.41 6.31 86.65 0.55 1.96 16 20 H 0.03 0.48 8.10 -2.39 -0.02 0.46 16 21 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 0.81 7.78 -2.38 -0.02 0.79 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.36 8.05 -2.38 -0.02 1.34 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 1.82 8.06 -2.38 -0.02 1.80 16 29 H 0.34 10.11 8.73 -89.69 -0.78 9.32 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 33 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.06 1.77 7.77 -2.39 -0.02 1.75 16 36 H 0.05 1.24 7.58 -2.39 -0.02 1.22 16 Total: -1.00 -65.68 288.08 -1.61 -67.29 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.18 Total: 11.76 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.23 Total: -23.56 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -7.91 Total: -102.40 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Total: -65.68 -1.61 -67.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037485058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.589 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds