Wall clock time and date at job start Mon Mar 30 2020 02:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00340 * 2 1 4 4 C 1.52995 * 109.47351 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.50556 * 305.07976 * 4 3 2 6 6 C 1.53118 * 109.50161 * 65.19817 * 4 3 2 7 7 C 1.53125 * 109.15784 * 177.59557 * 6 4 3 8 8 C 1.53031 * 109.28019 * 302.34549 * 7 6 4 9 9 N 1.46849 * 109.52469 * 59.18087 * 8 7 6 10 10 C 1.46895 * 111.00174 * 174.16527 * 9 8 7 11 11 C 1.50702 * 109.46770 * 294.20595 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.46850 * 111.19350 * 298.25751 * 9 8 7 20 20 H 1.09000 * 109.46680 * 299.99415 * 1 2 3 21 21 H 1.08996 * 109.47106 * 59.99310 * 1 2 3 22 22 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.00906 * 110.99484 * 236.04876 * 2 1 3 24 24 H 1.09000 * 109.46879 * 60.00058 * 3 2 1 25 25 H 1.09002 * 109.46794 * 300.00584 * 3 2 1 26 26 H 1.08997 * 109.52649 * 297.49862 * 6 4 3 27 27 H 1.08994 * 109.52421 * 57.69560 * 6 4 3 28 28 H 1.08993 * 109.50274 * 62.29077 * 7 6 4 29 29 H 1.09001 * 109.50134 * 182.36625 * 7 6 4 30 30 H 1.09011 * 109.46234 * 299.16642 * 8 7 6 31 31 H 1.08997 * 109.46305 * 179.20150 * 8 7 6 32 32 H 1.09004 * 109.47258 * 174.20919 * 10 9 8 33 33 H 1.08994 * 109.47601 * 54.20511 * 10 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.45767 * 181.75405 * 19 9 8 36 36 H 1.08993 * 109.46751 * 301.72405 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5250 1.3305 -0.0006 5 1 3.8734 0.7304 0.8399 6 6 4.0192 0.7118 -1.3112 7 6 5.5503 0.7297 -1.3293 8 6 6.0407 2.1700 -1.1650 9 7 5.5420 2.7166 0.1034 10 6 6.1058 4.0485 0.3606 11 6 7.5930 3.9316 0.5744 12 1 8.0716 2.9647 0.5238 13 6 8.3437 5.0599 0.8284 14 7 9.6424 4.9586 1.0096 15 14 7.5162 6.7323 0.9153 16 1 7.0917 7.0026 2.3124 17 1 8.4719 7.7809 0.4766 18 1 6.3271 6.7430 0.0258 19 6 4.0742 2.7534 0.1251 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8306 -0.5261 -0.7815 24 1 1.6461 1.8947 0.8900 25 1 1.6460 1.8947 -0.8900 26 1 3.6661 -0.3167 -1.3844 27 1 3.6383 1.2896 -2.1532 28 1 5.9310 0.1199 -0.5101 29 1 5.9076 0.3290 -2.2779 30 1 5.6709 2.7762 -1.9921 31 1 7.1306 2.1845 -1.1633 32 1 5.6430 4.4731 1.2514 33 1 5.9114 4.6965 -0.4939 34 1 10.1704 5.7523 1.1886 35 1 3.7357 3.1916 1.0640 36 1 3.7136 3.3568 -0.7079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040601539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:27 Heat of formation + Delta-G solvation = -7.662319 kcal Electronic energy + Delta-G solvation = -14533.241469 eV Core-core repulsion = 12244.596281 eV Total energy + Delta-G solvation = -2288.645189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80241 -36.09776 -33.41769 -31.90845 -30.99736 -27.71559 -26.24743 -24.17722 -22.82631 -21.87601 -20.22831 -19.23132 -16.75777 -16.09938 -15.36053 -14.67185 -14.28326 -14.10018 -14.00076 -13.63233 -13.31910 -12.94145 -12.59135 -12.20275 -12.09359 -11.74959 -11.42677 -11.33561 -10.79215 -10.66859 -10.56278 -10.29946 -9.99592 -9.85476 -9.65965 -9.20611 -8.55031 -8.54596 -7.30738 -6.03271 -4.00235 3.29674 3.36850 3.39039 4.13752 4.43694 4.77481 4.95525 5.13384 5.19760 5.25291 5.29478 5.32576 5.55958 5.63784 5.70513 5.79757 5.82857 5.89044 5.99145 6.15893 6.19396 6.29074 6.42257 6.56154 6.71934 6.75678 6.90920 6.93925 7.04846 7.25597 7.63167 7.96715 8.12381 8.69375 9.05584 9.58758 11.09901 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049959 B = 0.006766 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.325102 B = 4137.240674 C = 4524.774335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.064 3.936 4 C -0.083 4.083 5 H 0.088 0.912 6 C -0.113 4.113 7 C -0.116 4.116 8 C 0.063 3.937 9 N -0.526 5.526 10 C 0.162 3.838 11 C -0.508 4.508 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.874 3.126 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.269 1.269 19 C 0.061 3.939 20 H 0.063 0.937 21 H 0.018 0.982 22 H 0.065 0.935 23 H 0.341 0.659 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.024 0.976 33 H -0.013 1.013 34 H 0.263 0.737 35 H 0.067 0.933 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 -7.271 -4.655 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C -0.066 4.066 4 C -0.102 4.102 5 H 0.106 0.894 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.065 4.065 9 N -0.250 5.250 10 C 0.036 3.964 11 C -0.546 4.546 12 H 0.099 0.901 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.069 4.069 20 H 0.082 0.918 21 H 0.037 0.963 22 H 0.084 0.916 23 H 0.159 0.841 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -14.932 -7.529 -3.557 17.097 hybrid contribution -0.833 1.873 -1.479 2.528 sum -15.765 -5.656 -5.036 17.490 Atomic orbital electron populations 1.22182 0.88234 1.01571 1.00256 1.60423 1.07289 1.14763 1.50080 1.22022 0.95314 0.88966 1.00288 1.21198 0.92568 0.97419 0.98998 0.89397 1.21624 0.96810 0.99750 0.96932 1.21598 0.94614 0.97920 1.01252 1.21977 1.01626 0.93248 0.89620 1.61811 1.04109 1.26554 1.32541 1.20159 0.96623 0.84843 0.94798 1.21049 0.89753 0.95858 1.47957 0.90086 1.24898 0.94712 0.98766 0.94960 1.69895 1.05297 1.29496 1.49329 0.86872 0.79619 0.84501 0.78820 1.20125 1.21225 1.19364 1.22017 0.90125 0.94818 0.99918 0.91783 0.96323 0.91637 0.84117 0.90981 0.95565 0.92417 0.93074 0.91178 0.92364 0.96523 0.89355 0.95825 0.99563 0.92695 0.91447 0.96312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.89 16 2 N -0.69 -7.77 6.85 -121.13 -0.83 -8.60 16 3 C 0.06 0.78 5.15 -3.83 -0.02 0.76 16 4 C -0.08 -1.20 2.56 -90.54 -0.23 -1.43 16 5 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 6 C -0.11 -1.53 5.00 -26.61 -0.13 -1.66 16 7 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 8 C 0.06 1.24 5.29 -3.84 -0.02 1.22 16 9 N -0.53 -11.25 4.65 -236.12 -1.10 -12.35 16 10 C 0.16 4.02 3.79 -4.98 -0.02 4.00 16 11 C -0.51 -14.60 8.98 -34.44 -0.31 -14.91 16 12 H 0.08 2.53 7.36 -52.49 -0.39 2.14 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 15 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 19 C 0.06 1.06 4.74 -3.83 -0.02 1.04 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.34 3.48 7.13 -39.29 -0.28 3.20 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.67 6.80 -51.93 -0.35 0.31 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.09 1.94 6.70 -51.93 -0.35 1.59 16 32 H 0.02 0.59 7.42 -51.93 -0.39 0.20 16 33 H -0.01 -0.33 7.17 -51.93 -0.37 -0.71 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 279.94 15.07 4.22 4.22 Total: -1.00 -30.35 279.94 -8.33 -38.69 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.36 Total: -1.82 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.37 Total: -10.16 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -1.15 Total: -47.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.35 -8.33 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.025 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds