Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00340 * 2 1 4 4 C 1.52995 * 109.47351 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.50556 * 305.07976 * 4 3 2 6 6 C 1.53118 * 109.50161 * 65.19817 * 4 3 2 7 7 C 1.53125 * 109.15784 * 177.59557 * 6 4 3 8 8 C 1.53031 * 109.28019 * 302.34549 * 7 6 4 9 9 N 1.46849 * 109.52469 * 59.18087 * 8 7 6 10 10 C 1.46895 * 111.00174 * 174.16527 * 9 8 7 11 11 C 1.50702 * 109.46770 * 294.20595 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 10 9 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 10 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 10 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.46850 * 111.19350 * 298.25751 * 9 8 7 20 20 H 1.09000 * 109.46680 * 299.99415 * 1 2 3 21 21 H 1.08996 * 109.47106 * 59.99310 * 1 2 3 22 22 H 1.08999 * 109.46845 * 180.02562 * 1 2 3 23 23 H 1.00906 * 110.99484 * 236.04876 * 2 1 3 24 24 H 1.09000 * 109.46879 * 60.00058 * 3 2 1 25 25 H 1.09002 * 109.46794 * 300.00584 * 3 2 1 26 26 H 1.08997 * 109.52649 * 297.49862 * 6 4 3 27 27 H 1.08994 * 109.52421 * 57.69560 * 6 4 3 28 28 H 1.08993 * 109.50274 * 62.29077 * 7 6 4 29 29 H 1.09001 * 109.50134 * 182.36625 * 7 6 4 30 30 H 1.09011 * 109.46234 * 299.16642 * 8 7 6 31 31 H 1.08997 * 109.46305 * 179.20150 * 8 7 6 32 32 H 1.09004 * 109.47258 * 174.20919 * 10 9 8 33 33 H 1.08994 * 109.47601 * 54.20511 * 10 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 35 35 H 1.09005 * 109.45767 * 181.75405 * 19 9 8 36 36 H 1.08993 * 109.46751 * 301.72405 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 3.5250 1.3305 -0.0006 5 1 3.8734 0.7304 0.8399 6 6 4.0192 0.7118 -1.3112 7 6 5.5503 0.7297 -1.3293 8 6 6.0407 2.1700 -1.1650 9 7 5.5420 2.7166 0.1034 10 6 6.1058 4.0485 0.3606 11 6 7.5930 3.9316 0.5744 12 1 8.0716 2.9647 0.5238 13 6 8.3437 5.0599 0.8284 14 7 9.6424 4.9586 1.0096 15 14 7.5162 6.7323 0.9153 16 1 7.0917 7.0026 2.3124 17 1 8.4719 7.7809 0.4766 18 1 6.3271 6.7430 0.0258 19 6 4.0742 2.7534 0.1251 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8306 -0.5261 -0.7815 24 1 1.6461 1.8947 0.8900 25 1 1.6460 1.8947 -0.8900 26 1 3.6661 -0.3167 -1.3844 27 1 3.6383 1.2896 -2.1532 28 1 5.9310 0.1199 -0.5101 29 1 5.9076 0.3290 -2.2779 30 1 5.6709 2.7762 -1.9921 31 1 7.1306 2.1845 -1.1633 32 1 5.6430 4.4731 1.2514 33 1 5.9114 4.6965 -0.4939 34 1 10.1704 5.7523 1.1886 35 1 3.7357 3.1916 1.0640 36 1 3.7136 3.3568 -0.7079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040601539.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -30.344813 kcal Electronic energy + Delta-G solvation = -14534.225056 eV Core-core repulsion = 12244.596281 eV Total energy + Delta-G solvation = -2289.628775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16123 -37.24182 -35.15399 -33.73983 -32.25006 -29.62040 -27.30458 -25.57409 -24.08717 -23.37254 -21.80167 -20.54476 -18.93193 -17.15332 -16.76557 -16.18071 -15.85124 -15.50907 -15.25077 -14.96115 -14.60307 -14.38937 -14.16917 -13.81719 -13.27579 -13.00678 -12.80209 -12.55864 -12.52172 -12.34300 -12.00957 -11.84768 -11.63014 -11.53016 -11.07527 -11.02479 -10.78133 -9.36866 -9.00272 -8.29170 -6.32605 1.33660 1.34974 1.45726 2.33506 3.03076 3.08855 3.47854 3.83819 3.94025 4.04869 4.30122 4.45162 4.47225 4.52482 4.62895 4.66425 4.69282 4.72244 4.76631 4.80643 4.99616 5.02930 5.06138 5.11976 5.19738 5.28288 5.37936 5.50329 5.56403 6.00137 6.07381 6.40429 6.49447 6.68236 6.73690 7.31082 8.87537 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049959 B = 0.006766 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.325102 B = 4137.240674 C = 4524.774335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.705 5.705 3 C 0.073 3.927 4 C -0.074 4.074 5 H 0.071 0.929 6 C -0.106 4.106 7 C -0.109 4.109 8 C 0.064 3.936 9 N -0.544 5.544 10 C 0.171 3.829 11 C -0.517 4.517 12 H 0.037 0.963 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.948 3.052 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.254 1.254 19 C 0.059 3.941 20 H 0.062 0.938 21 H 0.026 0.974 22 H 0.079 0.921 23 H 0.347 0.653 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.049 0.951 32 H 0.027 0.973 33 H -0.015 1.015 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.003 -7.165 -5.339 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.337 5.337 3 C -0.056 4.056 4 C -0.094 4.094 5 H 0.089 0.911 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.064 4.064 9 N -0.269 5.269 10 C 0.044 3.956 11 C -0.555 4.555 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.588 5.588 15 Si 0.772 3.228 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.178 1.178 19 C -0.069 4.069 20 H 0.081 0.919 21 H 0.044 0.956 22 H 0.097 0.903 23 H 0.166 0.834 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.046 0.954 33 H 0.002 0.998 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -17.661 -7.450 -4.248 19.634 hybrid contribution 0.056 1.739 -1.265 2.151 sum -17.605 -5.711 -5.514 19.312 Atomic orbital electron populations 1.22230 0.86850 1.02616 1.00537 1.60393 1.08645 1.13976 1.50654 1.21847 0.93280 0.89905 1.00607 1.21087 0.94260 0.94984 0.99036 0.91077 1.21592 0.94696 1.01520 0.96553 1.21551 0.96497 0.94642 1.01997 1.21956 0.99450 0.96036 0.88994 1.61733 1.06776 1.24565 1.33798 1.19922 0.94096 0.86879 0.94691 1.21258 0.92144 0.94271 1.47839 0.94458 1.25849 0.95258 1.03408 0.94387 1.70049 1.07145 1.31016 1.50636 0.85702 0.78909 0.78639 0.79599 1.18867 1.20547 1.17771 1.22122 0.87389 0.97223 1.00212 0.91938 0.95566 0.90276 0.83404 0.91210 0.94749 0.89687 0.92058 0.92316 0.90118 0.96204 0.93207 0.95447 0.99771 0.92381 0.91430 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.78 16 2 N -0.70 -13.63 6.85 -537.16 -3.68 -17.31 16 3 C 0.07 1.60 5.15 86.30 0.44 2.04 16 4 C -0.07 -2.00 2.56 -10.74 -0.03 -2.03 16 5 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 6 C -0.11 -2.55 5.00 30.68 0.15 -2.40 16 7 C -0.11 -3.26 6.09 30.65 0.19 -3.07 16 8 C 0.06 2.52 5.29 86.32 0.46 2.98 16 9 N -0.54 -23.38 4.65 -900.93 -4.19 -27.57 16 10 C 0.17 8.53 3.79 85.56 0.32 8.85 16 11 C -0.52 -30.75 8.98 25.60 0.23 -30.52 16 12 H 0.04 2.47 7.36 -2.91 -0.02 2.45 16 13 C 0.01 0.49 5.47 84.66 0.46 0.95 16 14 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 15 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 16 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 19 C 0.06 1.99 4.74 86.32 0.41 2.40 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 22 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.35 5.86 7.13 -89.69 -0.64 5.22 16 24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 1.64 6.80 -2.39 -0.02 1.63 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.05 2.31 6.70 -2.39 -0.02 2.30 16 32 H 0.03 1.34 7.42 -2.38 -0.02 1.32 16 33 H -0.02 -0.76 7.17 -2.39 -0.02 -0.78 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.07 2.24 8.02 -2.38 -0.02 2.22 16 36 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.92 279.94 -1.35 -68.27 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.33 Total: 8.81 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: 4.01 Total: -19.03 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -7.57 Total: -104.73 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -66.92 -1.35 -68.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040601539.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.927 kcal (2) G-P(sol) polarization free energy of solvation -66.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds