Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00084 * 2 1 4 4 C 1.50699 * 109.46973 * 293.95591 * 3 2 1 5 5 H 1.08001 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99968 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00238 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47053 * 90.00206 * 8 6 4 10 10 H 1.48491 * 109.47529 * 210.00096 * 8 6 4 11 11 H 1.48504 * 109.46944 * 330.00603 * 8 6 4 12 12 C 1.46898 * 111.00067 * 123.95324 * 2 1 3 13 13 H 1.09001 * 109.47062 * 296.04661 * 12 2 1 14 14 C 1.52997 * 109.47123 * 176.04387 * 12 2 1 15 15 C 1.53002 * 109.46978 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 12 17 17 C 1.53000 * 109.47328 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 15 19 19 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 20 20 N 1.46902 * 109.47094 * 59.99827 * 18 17 16 21 21 H 1.09008 * 109.47100 * 296.04747 * 1 2 3 22 22 H 1.09000 * 109.47264 * 56.04069 * 1 2 3 23 23 H 1.08999 * 109.47597 * 176.04672 * 1 2 3 24 24 H 1.09005 * 109.46697 * 53.95282 * 3 2 1 25 25 H 1.08996 * 109.47380 * 173.95596 * 3 2 1 26 26 H 0.97000 * 120.00165 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47045 * 60.00157 * 14 12 2 28 28 H 1.09001 * 109.47375 * 300.00082 * 14 12 2 29 29 H 1.08992 * 109.47056 * 300.00064 * 15 14 12 30 30 H 1.09004 * 109.47006 * 180.02562 * 15 14 12 31 31 H 1.09004 * 109.47368 * 179.97438 * 16 15 14 32 32 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 33 33 H 1.09002 * 109.47398 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47194 * 300.00476 * 17 16 15 35 35 H 1.00900 * 110.99487 * 60.00820 * 20 18 17 36 36 H 1.00898 * 110.99915 * 183.95130 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5830 4.1869 -3.1382 9 1 0.2703 4.8668 -2.9970 10 1 2.6250 5.1884 -3.4790 11 1 1.5006 3.1711 -4.2183 12 6 1.9954 -0.7660 1.1376 13 1 1.7044 -0.2798 2.0688 14 6 3.5217 -0.8264 1.0491 15 6 4.0700 -1.6236 2.2343 16 6 3.5006 -3.0433 2.2011 17 6 1.9744 -2.9830 2.2895 18 6 1.4260 -2.1857 1.1044 19 1 0.3388 -2.1423 1.1675 20 7 1.8183 -2.8413 -0.1503 21 1 -0.3634 0.4513 0.9234 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8310 25 1 3.0797 1.3445 0.1082 26 1 2.9859 4.9183 -0.7766 27 1 3.9273 0.1850 1.0732 28 1 3.8127 -1.3125 0.1180 29 1 3.7790 -1.1371 3.1652 30 1 5.1574 -1.6663 2.1716 31 1 3.8916 -3.6115 3.0451 32 1 3.7917 -3.5298 1.2701 33 1 1.5688 -3.9944 2.2662 34 1 1.6833 -2.4965 3.2205 35 1 1.4540 -3.7811 -0.1964 36 1 1.5233 -2.2997 -0.9489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040988928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = -9.453948 kcal Electronic energy + Delta-G solvation = -15052.078502 eV Core-core repulsion = 12763.355622 eV Total energy + Delta-G solvation = -2288.722880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.03687 -35.31819 -32.81592 -32.29009 -29.55467 -27.85646 -27.03083 -24.54947 -22.42421 -21.33543 -20.05085 -18.49961 -16.50004 -15.67598 -15.34069 -14.59761 -14.38942 -13.88790 -13.61128 -13.21832 -12.94462 -12.70729 -12.13196 -11.83488 -11.47381 -11.40471 -11.13299 -10.85725 -10.79009 -10.61770 -10.50980 -10.20920 -10.00985 -9.89645 -9.32254 -9.10683 -8.38421 -8.14426 -7.17675 -5.99332 -4.00009 3.33091 3.39425 3.43741 4.44432 4.81802 4.94480 5.06860 5.31271 5.35051 5.40478 5.67094 5.73980 5.81392 5.92040 5.94138 6.03729 6.10860 6.19251 6.26696 6.34139 6.51111 6.59658 6.64624 6.72150 6.84718 7.08128 7.38903 7.39565 7.60278 7.84759 7.94985 8.16631 8.25556 8.61072 9.07396 9.63566 11.11552 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048466 B = 0.007934 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.586197 B = 3528.344826 C = 3809.854961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.534 5.534 3 C 0.190 3.810 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.092 3.908 13 H 0.026 0.974 14 C -0.104 4.104 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.111 4.111 18 C 0.099 3.901 19 H 0.028 0.972 20 N -0.833 5.833 21 H 0.008 0.992 22 H 0.074 0.926 23 H 0.041 0.959 24 H -0.013 1.013 25 H 0.039 0.961 26 H 0.260 0.740 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.325 0.675 36 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 -12.204 4.568 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.258 5.258 3 C 0.065 3.935 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.017 4.017 13 H 0.043 0.957 14 C -0.141 4.141 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.013 4.013 19 H 0.045 0.955 20 N -0.364 5.364 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.004 0.996 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.410 -12.130 4.420 12.917 hybrid contribution -1.609 1.022 -0.183 1.916 sum -2.020 -11.108 4.237 12.059 Atomic orbital electron populations 1.22265 0.89685 0.99040 1.00504 1.62123 1.05998 1.17791 1.39893 1.19792 0.95989 0.81425 0.96268 1.21173 1.34575 0.96851 1.01757 0.91986 1.24987 0.95388 0.97402 0.96910 1.69961 1.38476 1.11358 1.34086 0.86519 0.77914 0.79234 0.83865 1.20872 1.21281 1.19806 1.21562 0.95714 0.91993 0.92435 0.95654 1.21482 0.93927 1.00017 0.98703 1.21502 0.99500 0.95682 0.98626 1.21386 0.94637 0.96997 1.01499 1.21556 0.96840 0.99099 0.97414 1.21318 0.95633 0.94042 0.90326 0.95472 1.58630 1.67886 1.05476 1.04433 0.97327 0.90750 0.94018 0.99570 0.94352 0.93001 0.91832 0.90158 0.93117 0.92499 0.93540 0.90688 0.92749 0.92380 0.86447 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.92 60.06 0.54 1.20 16 2 N -0.53 -11.45 3.88 -236.32 -0.92 -12.37 16 3 C 0.19 5.00 4.54 -4.97 -0.02 4.98 16 4 C -0.50 -14.26 8.46 -34.44 -0.29 -14.55 16 5 H 0.06 1.73 7.12 -52.49 -0.37 1.35 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.09 1.71 1.71 -67.71 -0.12 1.59 16 13 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 14 C -0.10 -1.88 4.84 -26.73 -0.13 -2.01 16 15 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 16 C -0.11 -1.41 5.77 -26.73 -0.15 -1.56 16 17 C -0.11 -1.44 5.61 -26.73 -0.15 -1.59 16 18 C 0.10 1.49 2.59 -67.71 -0.18 1.31 16 19 H 0.03 0.42 6.35 -51.93 -0.33 0.09 16 20 N -0.83 -11.89 7.72 -4.67 -0.04 -11.92 16 21 H 0.01 0.16 8.14 -51.92 -0.42 -0.26 16 22 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 23 H 0.04 0.69 6.24 -51.93 -0.32 0.37 16 24 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 25 H 0.04 1.07 5.83 -51.93 -0.30 0.77 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.06 1.30 6.20 -51.93 -0.32 0.98 16 28 H 0.08 1.54 7.60 -51.93 -0.39 1.14 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.03 7.60 -51.93 -0.39 0.64 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.32 3.83 9.04 -39.29 -0.36 3.47 16 36 H 0.36 5.62 8.30 -39.29 -0.33 5.29 16 LS Contribution 274.02 15.07 4.13 4.13 Total: -1.00 -29.15 274.02 -7.86 -37.00 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.99 Total: 3.65 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.76 Total: -11.05 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.22 Total: -50.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.15 -7.86 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.547 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds