Wall clock time and date at job start Mon Mar 30 2020 02:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00084 * 2 1 4 4 C 1.50699 * 109.46973 * 293.95591 * 3 2 1 5 5 H 1.08001 * 120.00217 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99968 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00238 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47053 * 90.00206 * 8 6 4 10 10 H 1.48491 * 109.47529 * 210.00096 * 8 6 4 11 11 H 1.48504 * 109.46944 * 330.00603 * 8 6 4 12 12 C 1.46898 * 111.00067 * 123.95324 * 2 1 3 13 13 H 1.09001 * 109.47062 * 296.04661 * 12 2 1 14 14 C 1.52997 * 109.47123 * 176.04387 * 12 2 1 15 15 C 1.53002 * 109.46978 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 12 17 17 C 1.53000 * 109.47328 * 299.99597 * 16 15 14 18 18 C 1.52997 * 109.47060 * 60.00126 * 17 16 15 19 19 H 1.08996 * 109.47853 * 180.02562 * 18 17 16 20 20 N 1.46902 * 109.47094 * 59.99827 * 18 17 16 21 21 H 1.09008 * 109.47100 * 296.04747 * 1 2 3 22 22 H 1.09000 * 109.47264 * 56.04069 * 1 2 3 23 23 H 1.08999 * 109.47597 * 176.04672 * 1 2 3 24 24 H 1.09005 * 109.46697 * 53.95282 * 3 2 1 25 25 H 1.08996 * 109.47380 * 173.95596 * 3 2 1 26 26 H 0.97000 * 120.00165 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47045 * 60.00157 * 14 12 2 28 28 H 1.09001 * 109.47375 * 300.00082 * 14 12 2 29 29 H 1.08992 * 109.47056 * 300.00064 * 15 14 12 30 30 H 1.09004 * 109.47006 * 180.02562 * 15 14 12 31 31 H 1.09004 * 109.47368 * 179.97438 * 16 15 14 32 32 H 1.09001 * 109.47372 * 59.99964 * 16 15 14 33 33 H 1.09002 * 109.47398 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47194 * 300.00476 * 17 16 15 35 35 H 1.00900 * 110.99487 * 60.00820 * 20 18 17 36 36 H 1.00898 * 110.99915 * 183.95130 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5285 7 7 2.7120 4.0019 -0.6150 8 14 1.5830 4.1869 -3.1382 9 1 0.2703 4.8668 -2.9970 10 1 2.6250 5.1884 -3.4790 11 1 1.5006 3.1711 -4.2183 12 6 1.9954 -0.7660 1.1376 13 1 1.7044 -0.2798 2.0688 14 6 3.5217 -0.8264 1.0491 15 6 4.0700 -1.6236 2.2343 16 6 3.5006 -3.0433 2.2011 17 6 1.9744 -2.9830 2.2895 18 6 1.4260 -2.1857 1.1044 19 1 0.3388 -2.1423 1.1675 20 7 1.8183 -2.8413 -0.1503 21 1 -0.3634 0.4513 0.9234 22 1 -0.3634 0.5741 -0.8524 23 1 -0.3634 -1.0252 -0.0708 24 1 1.5611 1.9273 0.8310 25 1 3.0797 1.3445 0.1082 26 1 2.9859 4.9183 -0.7766 27 1 3.9273 0.1850 1.0732 28 1 3.8127 -1.3125 0.1180 29 1 3.7790 -1.1371 3.1652 30 1 5.1574 -1.6663 2.1716 31 1 3.8916 -3.6115 3.0451 32 1 3.7917 -3.5298 1.2701 33 1 1.5688 -3.9944 2.2662 34 1 1.6833 -2.4965 3.2205 35 1 1.4540 -3.7811 -0.1964 36 1 1.5233 -2.2997 -0.9489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040988928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:04 Heat of formation + Delta-G solvation = -29.973449 kcal Electronic energy + Delta-G solvation = -15052.968294 eV Core-core repulsion = 12763.355622 eV Total energy + Delta-G solvation = -2289.612672 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44247 -36.94764 -34.60484 -33.86003 -30.90492 -29.55286 -28.63535 -26.35636 -24.05961 -22.71626 -21.58844 -19.86452 -18.57283 -17.11919 -16.80058 -16.46925 -15.79974 -15.38555 -15.02367 -14.83817 -14.48803 -14.11289 -13.75240 -13.54054 -13.07027 -12.85244 -12.73098 -12.56028 -12.46633 -12.23496 -12.06013 -11.93723 -11.42926 -11.33110 -11.06354 -10.80503 -10.55454 -9.31483 -8.99001 -8.19804 -6.29638 1.40091 1.41927 1.53568 2.40135 3.12273 3.26897 3.70337 3.84862 4.11869 4.15079 4.40512 4.43398 4.45073 4.57829 4.62279 4.65317 4.73090 4.93750 4.98285 5.04600 5.12420 5.17144 5.25907 5.37404 5.42824 5.44069 5.45200 5.65138 5.71375 6.07566 6.35526 6.42795 6.68707 6.86110 6.87029 7.39660 8.91440 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048466 B = 0.007934 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.586197 B = 3528.344826 C = 3809.854961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.534 5.534 3 C 0.207 3.793 4 C -0.521 4.521 5 H 0.064 0.936 6 C -0.001 4.001 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.088 3.912 13 H 0.010 0.990 14 C -0.098 4.098 15 C -0.112 4.112 16 C -0.102 4.102 17 C -0.108 4.108 18 C 0.106 3.894 19 H 0.032 0.968 20 N -0.834 5.834 21 H 0.002 0.998 22 H 0.058 0.942 23 H 0.078 0.922 24 H -0.050 1.050 25 H 0.013 0.987 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.343 0.657 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -14.047 4.190 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.258 5.258 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.082 0.918 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.188 1.188 12 C -0.021 4.021 13 H 0.028 0.972 14 C -0.136 4.136 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.146 4.146 18 C -0.006 4.006 19 H 0.049 0.951 20 N -0.366 5.366 21 H 0.021 0.979 22 H 0.077 0.923 23 H 0.096 0.904 24 H -0.033 1.033 25 H 0.031 0.969 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.116 -14.015 4.051 14.631 hybrid contribution -1.376 1.574 -0.025 2.090 sum -2.492 -12.441 4.026 13.312 Atomic orbital electron populations 1.22261 0.88345 1.00975 0.99479 1.62061 1.07209 1.14933 1.41594 1.19419 0.94358 0.83764 0.94424 1.21494 1.34641 0.97464 1.02359 0.91760 1.25945 0.95073 0.98142 1.00734 1.70101 1.39488 1.11798 1.36312 0.85364 0.77855 0.78094 0.79182 1.19883 1.20820 1.18780 1.21711 0.96012 0.93856 0.90476 0.97212 1.21395 0.93873 0.98369 0.99979 1.21488 1.00123 0.96593 0.96750 1.21349 0.94685 0.95451 1.02419 1.21569 0.96690 1.00113 0.96237 1.21234 0.95659 0.91842 0.91829 0.95053 1.58570 1.68121 1.06330 1.03579 0.97909 0.92295 0.90377 1.03250 0.96864 0.92785 0.95601 0.91251 0.93002 0.91543 0.90998 0.91049 0.90057 0.92051 0.84338 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 8.92 127.69 1.14 2.61 16 2 N -0.53 -23.38 3.88 -901.59 -3.50 -26.88 16 3 C 0.21 11.39 4.54 85.56 0.39 11.78 16 4 C -0.52 -30.16 8.46 25.60 0.22 -29.94 16 5 H 0.06 3.61 7.12 -2.91 -0.02 3.59 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 7 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 8 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 12 C 0.09 3.29 1.71 44.92 0.08 3.37 16 13 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 14 C -0.10 -3.66 4.84 30.59 0.15 -3.51 16 15 C -0.11 -3.19 5.92 30.59 0.18 -3.00 16 16 C -0.10 -2.36 5.77 30.59 0.18 -2.18 16 17 C -0.11 -2.45 5.61 30.59 0.17 -2.28 16 18 C 0.11 2.99 2.59 44.92 0.12 3.10 16 19 H 0.03 0.87 6.35 -2.39 -0.02 0.86 16 20 N -0.83 -21.92 7.72 -168.67 -1.30 -23.22 16 21 H 0.00 0.09 8.14 -2.38 -0.02 0.08 16 22 H 0.06 2.47 6.76 -2.39 -0.02 2.45 16 23 H 0.08 2.46 6.24 -2.39 -0.01 2.45 16 24 H -0.05 -3.06 8.12 -2.38 -0.02 -3.08 16 25 H 0.01 0.80 5.83 -2.39 -0.01 0.78 16 26 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.03 1.12 6.20 -2.39 -0.01 1.11 16 28 H 0.07 2.70 7.60 -2.39 -0.02 2.68 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.75 7.60 -2.39 -0.02 1.73 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.34 6.96 9.04 -89.69 -0.81 6.15 16 36 H 0.35 10.37 8.30 -89.70 -0.74 9.63 16 Total: -1.00 -64.30 274.02 0.10 -64.20 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.49 Total: 15.97 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 3.08 Total: -19.67 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.51 Total: -107.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.30 0.10 -64.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.226 kcal (2) G-P(sol) polarization free energy of solvation -64.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds