Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47358 * 2 1 4 4 C 1.46906 * 110.99974 * 301.27834 * 3 2 1 5 5 C 1.50697 * 109.47126 * 289.47608 * 4 3 2 6 6 H 1.07999 * 119.99970 * 4.89662 * 5 4 3 7 7 C 1.37877 * 119.99837 * 184.89175 * 5 4 3 8 8 N 1.31510 * 120.00212 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99904 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47139 * 90.00144 * 9 7 5 11 11 H 1.48499 * 109.47084 * 210.00220 * 9 7 5 12 12 H 1.48496 * 109.46843 * 330.00113 * 9 7 5 13 13 C 1.46895 * 111.00017 * 65.23422 * 3 2 1 14 14 H 1.08999 * 110.54089 * 309.97206 * 13 3 2 15 15 C 1.54890 * 110.48660 * 187.36618 * 13 3 2 16 16 C 1.54893 * 102.75193 * 203.37863 * 15 13 3 17 17 C 1.54270 * 104.19160 * 37.94060 * 16 15 13 18 18 C 1.53873 * 106.59901 * 336.39123 * 17 16 15 19 19 H 1.08998 * 110.03162 * 240.66506 * 18 17 16 20 20 N 1.46904 * 110.03030 * 119.28576 * 18 17 16 21 21 H 1.08998 * 109.46748 * 305.49590 * 1 2 3 22 22 H 1.09006 * 109.46470 * 65.49061 * 1 2 3 23 23 H 1.08992 * 109.47047 * 185.48903 * 1 2 3 24 24 H 1.09004 * 109.46986 * 239.99824 * 2 1 3 25 25 H 1.09006 * 109.47195 * 120.00027 * 2 1 3 26 26 H 1.08997 * 109.46937 * 49.47491 * 4 3 2 27 27 H 1.09001 * 109.46830 * 169.47585 * 4 3 2 28 28 H 0.96995 * 120.00529 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.75724 * 85.06081 * 15 13 3 30 30 H 1.09006 * 110.75344 * 321.69446 * 15 13 3 31 31 H 1.08995 * 110.48750 * 156.61537 * 16 15 13 32 32 H 1.08995 * 110.48224 * 279.26704 * 16 15 13 33 33 H 1.09000 * 110.03045 * 95.67854 * 17 16 15 34 34 H 1.09002 * 110.03110 * 217.05673 * 17 16 15 35 35 H 1.00898 * 111.00223 * 55.80859 * 20 18 17 36 36 H 1.00907 * 110.99633 * 179.75929 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5239 2.1187 -1.1722 5 6 2.2031 1.6004 -2.4135 6 1 2.8705 0.7536 -2.3503 7 6 1.9724 2.2070 -3.6299 8 7 1.1600 3.2383 -3.7068 9 14 2.8138 1.5641 -5.1688 10 1 1.9599 0.5285 -5.8039 11 1 3.0257 2.6834 -6.1215 12 1 4.1248 0.9694 -4.8044 13 6 1.6536 2.0728 1.2453 14 1 0.5917 1.9443 1.4552 15 6 2.0107 3.5774 1.1586 16 6 2.1449 3.9833 2.6474 17 6 2.8161 2.7640 3.3128 18 6 2.5037 1.5493 2.4213 19 1 1.9423 0.8057 2.9868 20 7 3.7517 0.9608 1.9172 21 1 -0.3633 0.5967 0.8367 22 1 -0.3632 0.4264 -0.9352 23 1 -0.3633 -1.0229 0.0983 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.4469 1.9764 -1.2610 27 1 1.7417 3.1803 -1.0551 28 1 0.9974 3.6650 -4.5626 29 1 1.2096 4.1375 0.6762 30 1 2.9546 3.7207 0.6326 31 1 2.7752 4.8670 2.7466 32 1 1.1624 4.1632 3.0837 33 1 3.8937 2.9168 3.3714 34 1 2.4061 2.6107 4.3111 35 1 4.3694 0.7174 2.6770 36 1 3.5637 0.1597 1.3332 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -17.780138 kcal Electronic energy + Delta-G solvation = -15154.236437 eV Core-core repulsion = 12865.152507 eV Total energy + Delta-G solvation = -2289.083930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32221 -36.97966 -34.60129 -33.41134 -31.05782 -29.40291 -27.72831 -26.65853 -24.94301 -22.36957 -21.16113 -19.59876 -18.31925 -17.42062 -16.74105 -16.47738 -16.02123 -15.82545 -14.95382 -14.63293 -14.38201 -14.30486 -13.57818 -13.19378 -13.01861 -12.74578 -12.59568 -12.44314 -12.28088 -12.06651 -11.98876 -11.77046 -11.52190 -11.40641 -11.26584 -11.07558 -10.52512 -9.21550 -8.73667 -8.13228 -6.21145 1.40805 1.42513 1.53976 2.43601 3.17926 3.36368 3.71127 3.76341 3.97220 4.22434 4.28428 4.41877 4.45139 4.56080 4.60292 4.69500 4.78687 4.87274 5.02996 5.06241 5.13440 5.14390 5.22600 5.25186 5.32711 5.46973 5.50528 5.55227 5.74149 6.16644 6.52281 6.53519 6.87184 6.93135 6.95951 7.47052 8.96928 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035931 B = 0.009093 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.087814 B = 3078.389309 C = 3275.038732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 N -0.514 5.514 4 C 0.202 3.798 5 C -0.511 4.511 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.074 3.926 14 H 0.034 0.966 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.110 4.110 18 C 0.103 3.897 19 H 0.036 0.964 20 N -0.835 5.835 21 H 0.051 0.949 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.078 0.922 26 H -0.033 1.033 27 H 0.010 0.990 28 H 0.261 0.739 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.339 0.661 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -4.111 13.436 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.069 4.069 3 N -0.237 5.237 4 C 0.076 3.924 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.789 3.211 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.035 4.035 14 H 0.052 0.948 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.009 4.009 19 H 0.054 0.946 20 N -0.369 5.369 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.096 0.904 26 H -0.016 1.016 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.024 -3.313 12.932 13.502 hybrid contribution -1.127 -0.774 -0.781 1.575 sum 0.897 -4.087 12.151 12.851 Atomic orbital electron populations 1.22296 0.98952 1.02076 1.00622 1.22033 0.92585 0.91070 1.01244 1.62256 1.58551 1.01716 1.01214 1.19478 0.91703 0.93369 0.87887 1.21488 1.26113 1.14695 0.92641 0.92363 1.25846 0.96244 0.95332 1.02401 1.70085 1.38306 1.23340 1.26069 0.85466 0.79060 0.77797 0.78782 1.19986 1.21016 1.19103 1.22662 0.95647 0.94261 0.90947 0.94800 1.22413 1.00028 0.94833 0.97493 1.22260 1.01106 0.98307 0.93460 1.22189 1.01469 0.93138 0.97999 1.21844 0.90490 0.95826 0.92769 0.94581 1.58517 1.15160 1.38505 1.24693 0.92978 0.94888 0.90747 0.92213 0.90388 1.01555 0.97195 0.93030 0.94326 0.93021 0.90866 0.90790 0.90802 0.89854 0.84751 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.44 9.22 71.98 0.66 -5.78 16 2 C 0.06 2.21 5.13 86.30 0.44 2.65 16 3 N -0.51 -22.06 3.61 -869.24 -3.14 -25.20 16 4 C 0.20 10.88 4.33 85.56 0.37 11.25 16 5 C -0.51 -29.58 8.67 25.60 0.22 -29.36 16 6 H 0.06 3.33 7.24 -2.91 -0.02 3.31 16 7 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 8 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 9 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 13 C 0.07 2.70 2.40 45.99 0.11 2.81 16 14 H 0.03 1.25 6.04 -2.39 -0.01 1.24 16 15 C -0.11 -4.10 4.77 31.89 0.15 -3.95 16 16 C -0.11 -3.04 6.83 31.67 0.22 -2.83 16 17 C -0.11 -2.63 6.54 31.32 0.20 -2.42 16 18 C 0.10 2.92 3.36 45.64 0.15 3.07 16 19 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 20 N -0.84 -24.17 8.71 -165.68 -1.44 -25.62 16 21 H 0.05 1.76 6.14 -2.39 -0.01 1.74 16 22 H 0.03 1.40 6.47 -2.38 -0.02 1.39 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 2.44 7.11 -2.39 -0.02 2.43 16 25 H 0.08 2.39 6.22 -2.38 -0.01 2.37 16 26 H -0.03 -1.91 5.88 -2.39 -0.01 -1.93 16 27 H 0.01 0.59 5.92 -2.39 -0.01 0.58 16 28 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.04 1.56 7.71 -2.39 -0.02 1.54 16 30 H 0.05 2.23 7.97 -2.38 -0.02 2.22 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.76 7.90 -2.39 -0.02 1.74 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.34 7.70 8.99 -89.70 -0.81 6.89 16 36 H 0.34 10.42 6.27 -89.69 -0.56 9.85 16 Total: -1.00 -65.13 272.04 0.43 -64.70 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.30 Total: 20.04 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 3.00 Total: -24.15 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.30 Total: -108.26 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -65.13 0.43 -64.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.919 kcal (2) G-P(sol) polarization free energy of solvation -65.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds