Wall clock time and date at job start Mon Mar 30 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47368 * 2 1 4 4 C 1.46893 * 111.00361 * 198.28152 * 3 2 1 5 5 C 1.50701 * 109.47305 * 66.04767 * 4 3 2 6 6 H 1.08002 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99961 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99999 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00137 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46781 * 90.00532 * 9 7 5 11 11 H 1.48497 * 109.47315 * 210.00251 * 9 7 5 12 12 H 1.48497 * 109.47242 * 330.00470 * 9 7 5 13 13 C 1.46901 * 110.99583 * 74.32284 * 3 2 1 14 14 H 1.09001 * 110.02013 * 309.18823 * 13 3 2 15 15 C 1.53876 * 110.03126 * 70.58484 * 13 3 2 16 16 C 1.54263 * 106.59785 * 119.28080 * 15 13 3 17 17 C 1.54883 * 104.19915 * 23.61004 * 16 15 13 18 18 C 1.54266 * 110.03078 * 187.80031 * 13 3 2 19 19 H 1.09001 * 110.48891 * 335.78453 * 18 13 3 20 20 N 1.46896 * 110.48949 * 98.42991 * 18 13 3 21 21 H 1.09002 * 109.47010 * 174.79185 * 1 2 3 22 22 H 1.09001 * 109.46793 * 294.78651 * 1 2 3 23 23 H 1.09001 * 109.47749 * 54.79034 * 1 2 3 24 24 H 1.09007 * 109.47065 * 240.00245 * 2 1 3 25 25 H 1.08994 * 109.47565 * 120.00329 * 2 1 3 26 26 H 1.09001 * 109.46858 * 186.04447 * 4 3 2 27 27 H 1.09004 * 109.46944 * 306.04668 * 4 3 2 28 28 H 0.96997 * 119.99815 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.03068 * 238.56483 * 15 13 3 30 30 H 1.08996 * 110.02895 * 359.97438 * 15 13 3 31 31 H 1.09005 * 110.48329 * 142.28807 * 16 15 13 32 32 H 1.09001 * 110.48800 * 264.80031 * 16 15 13 33 33 H 1.09001 * 110.75851 * 80.36960 * 17 16 15 34 34 H 1.08998 * 110.76006 * 203.55457 * 17 16 15 35 35 H 1.00900 * 111.00149 * 174.77549 * 20 18 13 36 36 H 1.00901 * 110.99665 * 298.72997 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4228 1.4473 -0.4302 5 6 3.5243 1.0312 -1.8751 6 1 2.6353 0.7484 -2.4192 7 6 4.7521 1.0107 -2.5019 8 7 4.8405 0.6481 -3.7630 9 14 6.2898 1.4992 -1.5605 10 1 6.8773 0.2979 -0.9148 11 1 7.2777 2.0901 -2.4986 12 1 5.9367 2.4979 -0.5197 13 6 1.8458 2.0048 1.3205 14 1 0.8206 1.8683 1.6646 15 6 2.8276 1.3820 2.3284 16 6 3.7280 2.5287 2.8325 17 6 2.8846 3.8061 2.5960 18 6 2.1826 3.5084 1.2469 19 1 2.8570 3.7080 0.4141 20 7 0.9550 4.3047 1.1182 21 1 -0.3633 -1.0234 -0.0933 22 1 -0.3633 0.4308 0.9330 23 1 -0.3634 0.5925 -0.8396 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.7920 2.4668 -0.3189 27 1 4.0215 0.7749 0.1844 28 1 5.7043 0.6340 -4.2041 29 1 2.2789 0.9441 3.1622 30 1 3.4327 0.6197 1.8379 31 1 3.9444 2.4055 3.8937 32 1 4.6532 2.5682 2.2575 33 1 2.1511 3.9375 3.3916 34 1 3.5264 4.6834 2.5157 35 1 1.1589 5.2922 1.1550 36 1 0.4583 4.0692 0.2720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:41 Heat of formation + Delta-G solvation = -3.456558 kcal Electronic energy + Delta-G solvation = -15209.106423 eV Core-core repulsion = 12920.643610 eV Total energy + Delta-G solvation = -2288.462813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.11557 -35.23304 -32.55048 -32.27205 -30.14726 -28.19408 -26.41817 -25.09916 -22.23593 -21.27495 -20.06139 -18.18271 -17.14640 -15.67923 -15.27868 -14.91401 -14.45755 -14.12000 -13.67227 -13.39485 -13.17845 -12.52984 -12.41306 -11.73522 -11.56884 -11.22512 -11.08559 -10.87351 -10.83651 -10.71429 -10.59655 -10.22007 -10.13783 -9.82834 -9.78099 -9.23750 -8.59568 -8.30505 -7.28210 -6.06201 -4.02531 3.25820 3.33899 3.35471 4.40493 4.67063 4.79646 4.90953 5.21111 5.27830 5.36263 5.70234 5.78409 5.81071 5.92082 5.92643 5.97365 6.06009 6.14050 6.18429 6.24814 6.33579 6.41902 6.55090 6.59208 6.72663 6.76910 6.98387 7.06292 7.51630 7.64538 7.76271 7.98296 8.14654 8.67806 9.03364 9.56270 11.07014 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.012158 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.438432 B = 2302.520934 C = 2815.018474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.521 5.521 4 C 0.159 3.841 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.872 3.128 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.085 3.915 14 H 0.084 0.916 15 C -0.159 4.159 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.087 3.913 19 H 0.057 0.943 20 N -0.843 5.843 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.020 0.980 26 H 0.030 0.970 27 H -0.014 1.014 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.332 0.668 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 3.777 11.635 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 N -0.244 5.244 4 C 0.032 3.968 5 C -0.546 4.546 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.540 5.540 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.025 4.025 14 H 0.102 0.898 15 C -0.198 4.198 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.024 4.024 19 H 0.075 0.925 20 N -0.372 5.372 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.004 0.996 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.818 3.644 11.795 13.252 hybrid contribution 1.941 0.119 0.094 1.946 sum -2.877 3.762 11.889 12.797 Atomic orbital electron populations 1.21757 0.96415 1.00368 1.01412 1.21997 0.94458 0.89966 1.01068 1.62176 1.22414 1.17054 1.22753 1.20227 0.84255 0.96065 0.96220 1.21082 0.95068 1.44375 0.94103 0.90171 1.24895 0.98645 0.95030 0.94744 1.69895 1.24918 1.48586 1.10596 0.86911 0.83675 0.79321 0.80165 1.20337 1.21216 1.19169 1.22357 0.98592 0.92799 0.88769 0.89781 1.22826 0.98781 0.98811 0.99413 1.22247 0.98475 0.94933 1.00226 1.22528 0.98266 0.97221 0.97598 1.22332 0.90538 0.93076 0.96480 0.92476 1.58819 1.24037 1.08689 1.45634 0.93414 0.93812 0.92112 0.89357 0.96164 0.95248 0.99636 0.92719 0.92418 0.90986 0.92145 0.91826 0.90938 0.92316 0.85642 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.92 37.16 0.37 -1.91 16 2 C 0.05 1.02 5.34 -3.83 -0.02 1.00 16 3 N -0.52 -10.69 4.42 -226.74 -1.00 -11.70 16 4 C 0.16 3.78 2.96 -4.98 -0.01 3.77 16 5 C -0.51 -14.30 8.81 -34.44 -0.30 -14.61 16 6 H 0.08 2.46 7.53 -52.49 -0.40 2.07 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 9 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 13 C 0.08 1.47 2.60 -66.59 -0.17 1.30 16 14 H 0.08 1.44 6.59 -51.93 -0.34 1.10 16 15 C -0.16 -2.60 5.22 -25.61 -0.13 -2.73 16 16 C -0.12 -1.80 6.83 -25.08 -0.17 -1.98 16 17 C -0.12 -1.68 6.57 -24.70 -0.16 -1.84 16 18 C 0.09 1.43 3.45 -66.01 -0.23 1.20 16 19 H 0.06 1.10 5.93 -51.93 -0.31 0.79 16 20 N -0.84 -12.01 9.26 -3.23 -0.03 -12.04 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.04 0.65 6.92 -51.93 -0.36 0.29 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.09 1.94 6.58 -51.92 -0.34 1.60 16 25 H 0.02 0.37 6.84 -51.93 -0.36 0.02 16 26 H 0.03 0.72 4.98 -51.93 -0.26 0.46 16 27 H -0.01 -0.34 5.76 -51.93 -0.30 -0.63 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.32 5.31 -51.93 -0.28 1.04 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.33 4.07 9.06 -39.29 -0.36 3.71 16 36 H 0.35 5.06 9.06 -39.29 -0.36 4.70 16 LS Contribution 272.91 15.07 4.11 4.11 Total: -1.00 -29.35 272.91 -7.52 -36.88 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.77 Total: 6.60 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.93 Total: -13.93 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.26 Total: -50.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.35 -7.52 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.420 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds