Wall clock time and date at job start Mon Mar 30 2020 02:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47368 * 2 1 4 4 C 1.46893 * 111.00361 * 198.28152 * 3 2 1 5 5 C 1.50701 * 109.47305 * 66.04767 * 4 3 2 6 6 H 1.08002 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.37872 * 119.99961 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99999 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00137 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46781 * 90.00532 * 9 7 5 11 11 H 1.48497 * 109.47315 * 210.00251 * 9 7 5 12 12 H 1.48497 * 109.47242 * 330.00470 * 9 7 5 13 13 C 1.46901 * 110.99583 * 74.32284 * 3 2 1 14 14 H 1.09001 * 110.02013 * 309.18823 * 13 3 2 15 15 C 1.53876 * 110.03126 * 70.58484 * 13 3 2 16 16 C 1.54263 * 106.59785 * 119.28080 * 15 13 3 17 17 C 1.54883 * 104.19915 * 23.61004 * 16 15 13 18 18 C 1.54266 * 110.03078 * 187.80031 * 13 3 2 19 19 H 1.09001 * 110.48891 * 335.78453 * 18 13 3 20 20 N 1.46896 * 110.48949 * 98.42991 * 18 13 3 21 21 H 1.09002 * 109.47010 * 174.79185 * 1 2 3 22 22 H 1.09001 * 109.46793 * 294.78651 * 1 2 3 23 23 H 1.09001 * 109.47749 * 54.79034 * 1 2 3 24 24 H 1.09007 * 109.47065 * 240.00245 * 2 1 3 25 25 H 1.08994 * 109.47565 * 120.00329 * 2 1 3 26 26 H 1.09001 * 109.46858 * 186.04447 * 4 3 2 27 27 H 1.09004 * 109.46944 * 306.04668 * 4 3 2 28 28 H 0.96997 * 119.99815 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.03068 * 238.56483 * 15 13 3 30 30 H 1.08996 * 110.02895 * 359.97438 * 15 13 3 31 31 H 1.09005 * 110.48329 * 142.28807 * 16 15 13 32 32 H 1.09001 * 110.48800 * 264.80031 * 16 15 13 33 33 H 1.09001 * 110.75851 * 80.36960 * 17 16 15 34 34 H 1.08998 * 110.76006 * 203.55457 * 17 16 15 35 35 H 1.00900 * 111.00149 * 174.77549 * 20 18 13 36 36 H 1.00901 * 110.99665 * 298.72997 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4228 1.4473 -0.4302 5 6 3.5243 1.0312 -1.8751 6 1 2.6353 0.7484 -2.4192 7 6 4.7521 1.0107 -2.5019 8 7 4.8405 0.6481 -3.7630 9 14 6.2898 1.4992 -1.5605 10 1 6.8773 0.2979 -0.9148 11 1 7.2777 2.0901 -2.4986 12 1 5.9367 2.4979 -0.5197 13 6 1.8458 2.0048 1.3205 14 1 0.8206 1.8683 1.6646 15 6 2.8276 1.3820 2.3284 16 6 3.7280 2.5287 2.8325 17 6 2.8846 3.8061 2.5960 18 6 2.1826 3.5084 1.2469 19 1 2.8570 3.7080 0.4141 20 7 0.9550 4.3047 1.1182 21 1 -0.3633 -1.0234 -0.0933 22 1 -0.3633 0.4308 0.9330 23 1 -0.3634 0.5925 -0.8396 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 3.7920 2.4668 -0.3189 27 1 4.0215 0.7749 0.1844 28 1 5.7043 0.6340 -4.2041 29 1 2.2789 0.9441 3.1622 30 1 3.4327 0.6197 1.8379 31 1 3.9444 2.4055 3.8937 32 1 4.6532 2.5682 2.2575 33 1 2.1511 3.9375 3.3916 34 1 3.5264 4.6834 2.5157 35 1 1.1589 5.2922 1.1550 36 1 0.4583 4.0692 0.2720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:41 Heat of formation + Delta-G solvation = -25.443371 kcal Electronic energy + Delta-G solvation = -15210.059843 eV Core-core repulsion = 12920.643610 eV Total energy + Delta-G solvation = -2289.416233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53181 -36.71937 -34.67573 -33.47152 -31.78082 -29.85930 -27.75631 -26.61507 -24.04086 -22.80415 -21.29577 -19.69662 -19.16816 -17.18762 -16.81715 -16.26509 -16.04980 -15.56275 -15.32295 -14.89363 -14.65415 -14.37864 -14.02212 -13.20209 -13.08100 -12.76931 -12.65436 -12.37357 -12.22400 -12.14195 -11.98096 -11.81156 -11.71912 -11.50309 -11.27852 -11.24808 -10.79055 -9.55229 -8.90522 -8.30110 -6.31709 1.29854 1.31285 1.42096 2.31142 3.02611 3.20620 3.59354 3.67478 3.95102 4.12098 4.26126 4.47829 4.49970 4.59335 4.63744 4.70486 4.72040 4.82565 4.86146 4.93661 5.01803 5.07551 5.11903 5.18730 5.29429 5.32402 5.41777 5.46815 5.57949 6.04137 6.29470 6.45958 6.65964 6.72956 6.76816 7.31469 8.86641 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025531 B = 0.012158 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.438432 B = 2302.520934 C = 2815.018474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.053 3.947 3 N -0.533 5.533 4 C 0.176 3.824 5 C -0.513 4.513 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.250 1.250 13 C 0.084 3.916 14 H 0.093 0.907 15 C -0.158 4.158 16 C -0.120 4.120 17 C -0.108 4.108 18 C 0.086 3.914 19 H 0.024 0.976 20 N -0.835 5.835 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.031 0.969 26 H 0.028 0.972 27 H -0.015 1.015 28 H 0.266 0.734 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.345 0.655 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 4.722 14.440 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.075 4.075 3 N -0.256 5.256 4 C 0.049 3.951 5 C -0.551 4.551 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.174 1.174 13 C -0.025 4.025 14 H 0.111 0.889 15 C -0.198 4.198 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.026 4.026 19 H 0.042 0.958 20 N -0.364 5.364 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.002 0.998 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.803 4.601 14.622 16.064 hybrid contribution 1.812 -0.205 -0.823 2.001 sum -2.991 4.397 13.800 14.789 Atomic orbital electron populations 1.21657 0.93679 1.01663 1.01799 1.21977 0.96662 0.89213 0.99652 1.62106 1.20176 1.17944 1.25402 1.19888 0.86497 0.95389 0.93354 1.21322 0.93726 1.43888 0.96212 0.94463 1.25792 1.02343 0.95036 0.95628 1.70049 1.25997 1.50276 1.12565 0.85815 0.79080 0.79619 0.79102 1.19338 1.20665 1.17361 1.22460 0.99442 0.93343 0.87258 0.88912 1.22799 0.98624 0.98768 0.99560 1.22265 0.97449 0.94513 1.01570 1.22490 0.98389 0.97361 0.96370 1.22274 0.90802 0.92756 0.96779 0.95799 1.58825 1.22785 1.09495 1.45309 0.91417 0.91963 0.93352 0.93218 0.95063 0.95425 0.99789 0.92516 0.90200 0.93327 0.89420 0.93497 0.89376 0.91100 0.84190 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.92 71.98 0.71 -3.33 16 2 C 0.05 2.05 5.34 86.30 0.46 2.51 16 3 N -0.53 -21.87 4.42 -871.29 -3.85 -25.72 16 4 C 0.18 8.45 2.96 85.56 0.25 8.71 16 5 C -0.51 -29.96 8.81 25.60 0.23 -29.74 16 6 H 0.04 2.43 7.53 -2.91 -0.02 2.41 16 7 C 0.01 0.54 5.47 84.65 0.46 1.00 16 8 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 9 Si 0.94 44.61 27.47 68.60 1.88 46.50 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 13 C 0.08 2.77 2.60 45.64 0.12 2.89 16 14 H 0.09 2.92 6.59 -2.39 -0.02 2.91 16 15 C -0.16 -4.77 5.22 31.32 0.16 -4.61 16 16 C -0.12 -3.20 6.83 31.67 0.22 -2.98 16 17 C -0.11 -2.71 6.57 31.91 0.21 -2.50 16 18 C 0.09 2.65 3.45 46.02 0.16 2.81 16 19 H 0.02 0.91 5.93 -2.39 -0.01 0.89 16 20 N -0.83 -21.95 9.26 -164.13 -1.52 -23.47 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.70 6.92 -2.39 -0.02 1.68 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.05 2.28 6.58 -2.38 -0.02 2.27 16 25 H 0.03 1.13 6.84 -2.39 -0.02 1.11 16 26 H 0.03 1.35 4.98 -2.39 -0.01 1.34 16 27 H -0.02 -0.74 5.76 -2.39 -0.01 -0.76 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.70 5.31 -2.39 -0.01 1.69 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.35 7.61 9.06 -89.69 -0.81 6.79 16 36 H 0.34 9.53 9.06 -89.69 -0.81 8.72 16 Total: -1.00 -64.80 272.91 -0.81 -65.61 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.61 Total: 21.86 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 2.98 Total: -25.25 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -5.07 Total: -108.72 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -64.80 -0.81 -65.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.171 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds