Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46895 * 109.47219 * 2 1 4 4 C 1.46903 * 110.99598 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.46710 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46710 * 179.97438 * 5 4 3 7 7 C 1.46903 * 110.99590 * 190.00288 * 6 5 4 8 8 C 1.50697 * 109.47062 * 161.83379 * 7 6 5 9 9 H 1.08003 * 120.00185 * 354.36999 * 8 7 6 10 10 C 1.37875 * 119.99982 * 174.36084 * 8 7 6 11 11 N 1.31510 * 120.00078 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99969 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47311 * 60.00424 * 12 10 8 14 14 H 1.48504 * 109.47307 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47186 * 300.00466 * 12 10 8 16 16 C 1.46897 * 111.00263 * 66.04954 * 6 5 4 17 17 C 1.52997 * 117.50034 * 261.91095 * 16 6 5 18 18 C 1.52999 * 117.50125 * 193.24834 * 16 6 5 19 19 H 1.08994 * 109.47114 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.46615 * 299.99793 * 1 2 3 21 21 H 1.08996 * 109.46823 * 59.99846 * 1 2 3 22 22 H 1.09008 * 109.46761 * 239.99879 * 2 1 3 23 23 H 1.08999 * 109.47043 * 120.00619 * 2 1 3 24 24 H 1.00890 * 111.00272 * 56.04735 * 3 2 1 25 25 H 1.09003 * 109.47451 * 60.00457 * 4 3 2 26 26 H 1.08994 * 109.47262 * 299.99728 * 4 3 2 27 27 H 1.08994 * 109.47230 * 299.99985 * 5 4 3 28 28 H 1.09001 * 109.47071 * 60.00384 * 5 4 3 29 29 H 1.09002 * 109.46847 * 281.83424 * 7 6 5 30 30 H 1.08995 * 109.47379 * 41.83637 * 7 6 5 31 31 H 0.97000 * 119.99959 * 180.02562 * 11 10 8 32 32 H 1.09005 * 115.54791 * 47.57726 * 16 6 5 33 33 H 1.09000 * 117.49441 * 359.97438 * 17 16 6 34 34 H 1.08995 * 117.50263 * 145.01542 * 17 16 6 35 35 H 1.08994 * 117.49727 * 214.97908 * 18 16 6 36 36 H 1.08998 * 117.49758 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4883 1.4240 -0.0006 5 6 3.9596 2.8797 -0.0012 6 7 5.4282 2.9187 -0.0012 7 6 5.9184 4.2830 0.2364 8 6 7.3606 4.2301 0.6701 9 1 7.8364 3.2769 0.8482 10 6 8.0729 5.3984 0.8394 11 7 7.4936 6.5590 0.6229 12 14 9.8609 5.3327 1.3764 13 1 10.6510 4.5729 0.3746 14 1 10.3961 6.7137 1.4855 15 1 9.9569 4.6594 2.6965 16 6 5.9693 2.3757 -1.2543 17 6 6.4396 0.9198 -1.2484 18 6 7.4648 2.0555 -1.2980 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8934 -0.5139 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.6443 1.9012 0.7813 25 1 3.8648 0.9202 -0.8909 26 1 3.8655 0.9199 0.8891 27 1 3.5824 3.3833 -0.8912 28 1 3.5831 3.3839 0.8888 29 1 5.8363 4.8637 -0.6824 30 1 5.3211 4.7528 1.0178 31 1 7.9948 7.3809 0.7417 32 1 5.5082 2.7519 -2.1676 33 1 6.3479 0.3651 -0.3146 34 1 6.2884 0.3383 -2.1578 35 1 7.9875 2.2208 -2.2400 36 1 8.0472 2.2483 -0.3970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = 6.897592 kcal Electronic energy + Delta-G solvation = -14318.962822 eV Core-core repulsion = 12030.948999 eV Total energy + Delta-G solvation = -2288.013824 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.53771 -37.39077 -35.32934 -34.41914 -31.96262 -29.37300 -26.95907 -24.16809 -23.15725 -23.04363 -22.76830 -20.97097 -18.57152 -17.08772 -16.69626 -16.63562 -16.03761 -15.91210 -15.03548 -14.74204 -14.45304 -14.30516 -13.81963 -13.38536 -13.01684 -12.86203 -12.68696 -12.57622 -12.36793 -12.31941 -12.09228 -11.90368 -11.68122 -11.20620 -11.00662 -10.68864 -10.51641 -9.39080 -9.06084 -8.15151 -6.23152 1.42509 1.45341 1.52703 2.42072 2.92231 3.11017 3.17797 3.58245 4.02949 4.18531 4.21069 4.27873 4.34444 4.40993 4.57415 4.64053 4.64811 4.82782 4.89617 4.95924 5.00324 5.09495 5.12849 5.13677 5.20184 5.35039 5.37165 5.48357 5.78613 6.05678 6.10717 6.40410 6.43770 6.65798 6.91529 7.44637 8.95823 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045687 B = 0.006493 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.722422 B = 4311.361488 C = 4682.057921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 N -0.700 5.700 4 C 0.083 3.917 5 C 0.064 3.936 6 N -0.515 5.515 7 C 0.211 3.789 8 C -0.507 4.507 9 H 0.072 0.928 10 C 0.000 4.000 11 N -0.939 5.939 12 Si 0.964 3.036 13 H -0.265 1.265 14 H -0.287 1.287 15 H -0.269 1.269 16 C 0.001 3.999 17 C -0.144 4.144 18 C -0.171 4.171 19 H 0.074 0.926 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.343 0.657 25 H 0.074 0.926 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.058 0.942 29 H -0.037 1.037 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -12.998 -2.166 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.333 5.333 4 C -0.046 4.046 5 C -0.064 4.064 6 N -0.239 5.239 7 C 0.085 3.915 8 C -0.545 4.545 9 H 0.090 0.910 10 C -0.198 4.198 11 N -0.581 5.581 12 Si 0.789 3.211 13 H -0.190 1.190 14 H -0.212 1.212 15 H -0.194 1.194 16 C -0.108 4.108 17 C -0.181 4.181 18 C -0.208 4.208 19 H 0.093 0.907 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.160 0.840 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.076 0.924 29 H -0.019 1.019 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.896 -13.047 -2.458 15.447 hybrid contribution 0.715 1.061 0.532 1.385 sum -7.181 -11.987 -1.926 14.105 Atomic orbital electron populations 1.21735 0.93670 1.02559 1.02246 1.21968 0.96614 0.88411 1.00573 1.60466 1.07545 1.14875 1.50375 1.21671 0.87148 0.95037 1.00757 1.21950 0.87774 0.97162 0.99554 1.61812 1.06641 1.23384 1.32087 1.19364 0.95377 0.83784 0.93018 1.21514 0.96248 0.92811 1.43964 0.90969 1.25880 1.03023 0.94968 0.95887 1.70093 1.38691 0.98069 1.51209 0.85517 0.79435 0.77014 0.79175 1.18998 1.21239 1.19410 1.22170 0.98253 0.99362 0.91031 1.23064 1.02095 0.89732 1.03245 1.23118 0.91898 1.02691 1.03109 0.90664 0.92546 0.92441 0.91160 0.95120 0.83963 0.90755 0.95134 0.96089 0.92358 1.01901 0.98391 0.92940 0.91556 0.88843 0.86895 0.88868 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.17 71.98 0.73 -1.62 16 2 C 0.05 1.09 6.40 86.31 0.55 1.64 16 3 N -0.70 -17.90 6.50 -513.86 -3.34 -21.24 16 4 C 0.08 2.50 5.51 86.31 0.48 2.98 16 5 C 0.06 2.41 5.21 86.31 0.45 2.86 16 6 N -0.51 -22.68 4.58 -875.51 -4.01 -26.69 16 7 C 0.21 11.46 4.75 85.56 0.41 11.87 16 8 C -0.51 -28.56 7.82 25.60 0.20 -28.36 16 9 H 0.07 3.94 5.55 -2.91 -0.02 3.93 16 10 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 11 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 12 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.00 0.04 4.19 44.91 0.19 0.22 16 17 C -0.14 -4.46 9.31 30.62 0.29 -4.17 16 18 C -0.17 -6.48 9.41 30.62 0.29 -6.19 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.34 8.23 8.73 -89.70 -0.78 7.45 16 25 H 0.07 2.22 6.61 -2.39 -0.02 2.20 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 28 H 0.06 2.23 7.84 -2.39 -0.02 2.21 16 29 H -0.04 -2.22 8.02 -2.39 -0.02 -2.24 16 30 H 0.00 -0.11 7.76 -2.39 -0.02 -0.13 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.09 4.00 5.32 -2.39 -0.01 3.99 16 Total: -1.00 -62.98 291.15 -0.75 -63.73 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.25 Total: 15.14 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.04 Total: -20.33 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -7.07 Total: -104.96 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -62.98 -0.75 -63.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.631 kcal (2) G-P(sol) polarization free energy of solvation -62.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds