Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46844 * 111.00297 * 2 1 4 4 C 1.53038 * 109.52314 * 174.15912 * 3 2 1 5 5 C 1.53123 * 109.27669 * 59.18318 * 4 3 2 6 6 C 1.53120 * 109.15831 * 302.34448 * 5 4 3 7 7 H 1.08997 * 109.53224 * 297.69073 * 6 5 4 8 8 C 1.53002 * 109.49882 * 177.59603 * 6 5 4 9 9 N 1.46895 * 109.46891 * 175.19555 * 8 6 5 10 10 C 1.46908 * 110.99940 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.46915 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00441 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99716 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99993 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46923 * 59.99886 * 15 13 11 17 17 H 1.48500 * 109.47280 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47522 * 300.00176 * 15 13 11 19 19 C 1.46844 * 110.99853 * 235.79163 * 2 1 3 20 20 H 1.09002 * 109.47401 * 184.20627 * 1 2 3 21 21 H 1.09001 * 109.46874 * 64.20639 * 1 2 3 22 22 H 1.09004 * 109.46970 * 304.20773 * 1 2 3 23 23 H 1.08995 * 109.46425 * 294.18075 * 3 2 1 24 24 H 1.09008 * 109.45740 * 54.14720 * 3 2 1 25 25 H 1.09000 * 109.50747 * 299.24167 * 4 3 2 26 26 H 1.09004 * 109.50459 * 179.12275 * 4 3 2 27 27 H 1.09003 * 109.51976 * 182.43577 * 5 4 3 28 28 H 1.08996 * 109.52209 * 62.25174 * 5 4 3 29 29 H 1.09000 * 109.47046 * 295.19860 * 8 6 5 30 30 H 1.09001 * 109.47101 * 55.19703 * 8 6 5 31 31 H 1.00903 * 111.00379 * 303.95103 * 9 8 6 32 32 H 1.09001 * 109.47067 * 300.00107 * 10 9 8 33 33 H 1.08994 * 109.46872 * 60.00333 * 10 9 8 34 34 H 0.96998 * 119.99902 * 179.97438 * 14 13 11 35 35 H 1.09007 * 109.46691 * 305.86028 * 19 2 1 36 36 H 1.09003 * 109.46576 * 65.83652 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 0.1468 5 6 4.1188 0.5368 -1.0144 6 6 3.5181 -0.8716 -1.0209 7 1 3.7813 -1.3843 -0.0958 8 6 4.0680 -1.6559 -2.2140 9 7 3.5818 -3.0408 -2.1554 10 6 4.0904 -3.8256 -3.2884 11 6 3.5713 -5.2373 -3.1949 12 1 2.9284 -5.5231 -2.3756 13 6 3.9182 -6.1642 -4.1548 14 7 4.7015 -5.8164 -5.1523 15 14 3.2754 -7.9143 -4.0385 16 1 1.7908 -7.8997 -4.0737 17 1 3.7893 -8.7076 -5.1839 18 1 3.7343 -8.5268 -2.7660 19 6 1.9952 -0.7707 -1.1337 20 1 -0.3634 -1.0249 0.0754 21 1 -0.3633 0.4472 -0.9253 22 1 -0.3633 0.5778 0.8499 23 1 1.7325 1.8608 -0.9375 24 1 1.5635 1.9256 0.8331 25 1 3.7815 0.8566 1.0906 26 1 3.9101 2.3511 0.1311 27 1 5.1998 0.4713 -0.8905 28 1 3.8888 1.0354 -1.9560 29 1 3.7310 -1.1913 -3.1406 30 1 5.1575 -1.6515 -2.1806 31 1 3.8263 -3.4731 -1.2771 32 1 3.7532 -3.3759 -4.2224 33 1 5.1800 -3.8363 -3.2630 34 1 4.9458 -6.4687 -5.8273 35 1 1.5633 -1.7715 -1.1244 36 1 1.7326 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044536990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -35.992704 kcal Electronic energy + Delta-G solvation = -14299.259039 eV Core-core repulsion = 12009.385352 eV Total energy + Delta-G solvation = -2289.873686 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.12339 -37.18960 -35.04948 -33.99536 -32.03699 -28.78400 -27.65072 -25.86358 -23.89065 -23.27896 -22.19657 -20.61030 -18.55064 -16.96308 -16.52476 -16.44668 -15.86380 -15.44465 -15.35470 -15.18325 -14.49002 -14.03281 -13.82323 -13.48104 -13.28185 -13.10518 -13.00103 -12.66528 -12.59813 -12.29943 -12.08922 -11.88538 -11.55484 -11.47686 -11.21175 -11.03604 -10.65649 -9.25345 -9.10488 -8.22799 -6.34390 1.41277 1.45163 1.53205 2.40212 3.02616 3.10381 3.51973 3.91669 3.93954 4.06597 4.18708 4.38659 4.52478 4.55916 4.58422 4.67687 4.72496 4.81607 4.87878 4.92617 5.02552 5.04927 5.09422 5.12529 5.20703 5.26640 5.39231 5.50511 5.61405 6.01569 6.14568 6.23356 6.44681 6.71952 6.88824 7.36767 8.88788 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049021 B = 0.005781 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.043041 B = 4842.173108 C = 5256.575478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.052 3.948 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.070 4.070 7 H 0.072 0.928 8 C 0.066 3.934 9 N -0.685 5.685 10 C 0.208 3.792 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.077 3.923 20 H 0.064 0.936 21 H 0.022 0.978 22 H 0.084 0.916 23 H 0.028 0.972 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.020 0.980 31 H 0.335 0.665 32 H -0.003 1.003 33 H -0.040 1.040 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 13.851 10.656 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.076 4.076 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.089 4.089 7 H 0.090 0.910 8 C -0.064 4.064 9 N -0.316 5.316 10 C 0.080 3.920 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.051 4.051 20 H 0.082 0.918 21 H 0.041 0.959 22 H 0.103 0.897 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.152 0.848 32 H 0.015 0.985 33 H -0.023 1.023 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.951 13.718 10.615 18.038 hybrid contribution 0.566 -0.725 -1.060 1.403 sum -4.385 12.993 9.554 16.713 Atomic orbital electron populations 1.22375 0.86599 1.02456 1.00802 1.61952 1.08397 1.14335 1.43360 1.22199 0.96133 0.88599 1.00669 1.21555 0.94029 1.00736 0.98395 1.21615 1.00309 0.94170 0.99183 1.21075 0.94579 0.96038 0.97196 0.90992 1.21963 0.96175 0.89738 0.98500 1.60529 1.63250 1.02060 1.05747 1.19193 0.91032 0.92431 0.89294 1.21526 1.30227 0.95513 1.10241 0.91687 1.25980 0.95165 1.03955 0.94653 1.70089 1.37046 1.36686 1.13737 0.85356 0.78788 0.78064 0.77901 1.19333 1.20727 1.19011 1.21878 0.95007 0.97847 0.90362 0.91760 0.95946 0.89746 0.95370 0.89314 0.91292 0.89456 0.91159 0.92376 0.92958 0.96208 0.84834 0.98472 1.02270 0.92591 0.91428 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 127.69 1.22 1.78 16 2 N -0.56 -13.99 4.91 -922.58 -4.53 -18.52 16 3 C 0.05 1.05 5.46 86.33 0.47 1.52 16 4 C -0.11 -2.10 6.09 30.65 0.19 -1.91 16 5 C -0.11 -2.68 5.29 30.68 0.16 -2.52 16 6 C -0.07 -2.05 2.49 -10.74 -0.03 -2.07 16 7 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 8 C 0.07 2.44 5.08 86.30 0.44 2.88 16 9 N -0.69 -30.45 5.96 -517.93 -3.09 -33.54 16 10 C 0.21 11.53 5.44 85.55 0.47 12.00 16 11 C -0.54 -31.33 9.32 25.60 0.24 -31.09 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.03 5.46 84.65 0.46 0.50 16 14 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 15 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C 0.08 2.31 4.62 86.33 0.40 2.71 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 22 H 0.08 1.44 8.09 -2.38 -0.02 1.42 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.09 1.47 8.09 -2.38 -0.02 1.45 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.33 14.18 8.72 -89.69 -0.78 13.40 16 32 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.07 2.34 7.76 -2.38 -0.02 2.32 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -64.19 288.49 -1.05 -65.24 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.24 Total: 13.39 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.02 Total: -16.21 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -7.33 Total: -109.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.19 -1.05 -65.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044536990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.244 kcal (2) G-P(sol) polarization free energy of solvation -64.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds