Wall clock time and date at job start Mon Mar 30 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46842 * 111.00010 * 2 1 4 4 C 1.53037 * 109.52259 * 185.83686 * 3 2 1 5 5 C 1.53116 * 109.27684 * 300.81276 * 4 3 2 6 6 C 1.53125 * 109.16013 * 57.65848 * 5 4 3 7 7 H 1.09007 * 109.50183 * 62.32174 * 6 5 4 8 8 C 1.52995 * 109.50443 * 182.40056 * 6 5 4 9 9 N 1.46906 * 109.46978 * 184.99998 * 8 6 5 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.46851 * 110.99675 * 124.20098 * 2 1 3 20 20 H 1.09006 * 109.46711 * 56.05482 * 1 2 3 21 21 H 1.09001 * 109.47176 * 176.05035 * 1 2 3 22 22 H 1.08995 * 109.47686 * 296.05158 * 1 2 3 23 23 H 1.08996 * 109.46712 * 65.81701 * 3 2 1 24 24 H 1.09003 * 109.45900 * 305.84766 * 3 2 1 25 25 H 1.08998 * 109.50305 * 180.87680 * 4 3 2 26 26 H 1.08996 * 109.53703 * 60.78003 * 4 3 2 27 27 H 1.08997 * 109.52821 * 297.75212 * 5 4 3 28 28 H 1.09007 * 109.52454 * 177.55787 * 5 4 3 29 29 H 1.08995 * 109.46859 * 65.00290 * 8 6 5 30 30 H 1.09002 * 109.47639 * 304.99958 * 8 6 5 31 31 H 1.00898 * 110.99995 * 303.95410 * 9 8 6 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.09009 * 109.46043 * 54.14874 * 19 2 1 36 36 H 1.08993 * 109.46612 * 294.18021 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1187 0.5371 1.0146 6 6 3.5180 -0.8714 1.0211 7 1 3.7819 -1.3839 0.0960 8 6 4.0679 -1.6557 2.2142 9 7 3.5856 -3.0420 2.1531 10 6 4.0942 -3.8267 3.2861 11 6 3.5792 -5.2397 3.1899 12 1 2.9385 -5.5262 2.3691 13 6 3.9268 -6.1669 4.1493 14 7 4.7074 -5.8181 5.1486 15 14 3.2890 -7.9185 4.0297 16 1 4.2444 -8.7407 3.2447 17 1 3.1497 -8.4888 5.3938 18 1 1.9658 -7.9186 3.3558 19 6 1.9951 -0.7706 1.1339 20 1 -0.3633 0.5739 -0.8526 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3634 0.4513 0.9232 23 1 1.7323 1.8609 0.9375 24 1 1.5634 1.9256 -0.8331 25 1 3.9098 2.3511 -0.1310 26 1 3.7819 0.8570 -1.0905 27 1 3.8885 1.0356 1.9561 28 1 5.1997 0.4714 0.8908 29 1 3.7278 -1.1932 3.1408 30 1 5.1574 -1.6483 2.1829 31 1 2.5778 -3.0729 2.1157 32 1 3.7541 -3.3791 4.2199 33 1 5.1840 -3.8343 3.2625 34 1 4.9517 -6.4703 5.8237 35 1 1.5633 -1.7715 1.1245 36 1 1.7323 -0.2707 2.0661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044536991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:24 Heat of formation + Delta-G solvation = -14.205351 kcal Electronic energy + Delta-G solvation = -14309.477216 eV Core-core repulsion = 12020.548300 eV Total energy + Delta-G solvation = -2288.928916 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.10537 -35.56584 -33.49342 -32.40959 -30.63285 -26.92904 -26.69346 -24.37785 -22.80681 -21.50435 -20.80761 -19.49196 -16.46037 -15.69610 -15.41825 -14.66768 -14.56424 -14.39144 -14.02122 -13.53543 -13.00143 -12.75165 -12.63851 -12.17784 -12.00479 -11.80986 -11.38535 -11.01965 -10.98038 -10.80089 -10.70310 -10.34708 -10.27721 -10.08759 -9.76897 -9.12434 -8.45485 -8.30264 -7.24539 -6.00974 -4.02816 3.34090 3.39529 3.43564 3.95552 4.44979 4.81744 4.91271 4.96686 5.15371 5.34826 5.36178 5.40892 5.41618 5.52075 5.62301 5.68899 5.83447 5.85955 5.90288 6.00016 6.04943 6.09175 6.23580 6.31417 6.51434 6.70657 7.10566 7.13983 7.29438 7.45282 7.81571 8.15998 8.43349 8.65416 9.06763 9.62089 11.10251 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049218 B = 0.005782 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.759390 B = 4841.447639 C = 5258.113039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.081 4.081 7 H 0.086 0.914 8 C 0.065 3.935 9 N -0.689 5.689 10 C 0.193 3.807 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.060 3.940 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.022 0.978 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.326 0.674 32 H -0.015 1.015 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.081 0.919 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 13.983 -8.505 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.101 4.101 7 H 0.105 0.895 8 C -0.066 4.066 9 N -0.320 5.320 10 C 0.066 3.934 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.067 4.067 20 H 0.083 0.917 21 H 0.089 0.911 22 H 0.040 0.960 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.003 0.997 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.509 13.470 -9.188 16.918 hybrid contribution -1.087 -0.214 1.623 1.966 sum -5.596 13.256 -7.565 16.256 Atomic orbital electron populations 1.22345 0.87584 1.02388 0.99990 1.61910 1.07277 1.13375 1.44111 1.22088 0.95902 0.89389 0.99904 1.21567 0.94257 0.99802 0.99676 1.21618 1.00160 0.95680 0.98001 1.21225 0.93413 0.94958 1.00466 0.89547 1.21901 0.99912 0.90104 0.94657 1.60709 1.14172 1.08739 1.48401 1.19555 0.96039 0.92097 0.85698 1.21207 1.30264 0.94696 1.09047 0.91958 1.24997 0.95286 0.99102 0.95237 1.69968 1.36152 1.34801 1.12929 0.86476 0.79287 0.84398 0.77109 1.20586 1.21331 1.19848 1.22187 0.95921 0.98216 0.90420 0.91695 0.91138 0.95981 0.95301 0.91199 0.91866 0.91058 0.92555 0.91621 0.96704 0.91576 0.85665 0.99741 0.95437 0.92945 0.90079 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.06 0.58 0.85 16 2 N -0.54 -7.02 4.91 -242.96 -1.19 -8.21 16 3 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 4 C -0.12 -1.25 6.09 -26.65 -0.16 -1.42 16 5 C -0.12 -1.46 5.29 -26.61 -0.14 -1.60 16 6 C -0.08 -1.23 2.56 -90.54 -0.23 -1.46 16 7 H 0.09 1.42 8.14 -51.92 -0.42 0.99 16 8 C 0.06 1.19 5.15 -3.82 -0.02 1.17 16 9 N -0.69 -15.23 6.49 -115.05 -0.75 -15.97 16 10 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 11 C -0.51 -14.87 9.32 -34.44 -0.32 -15.19 16 12 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 15 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.06 0.87 4.50 -3.83 -0.02 0.85 16 20 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.33 6.88 7.00 -39.29 -0.28 6.60 16 32 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.08 1.25 6.71 -51.92 -0.35 0.90 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -30.31 286.26 -8.88 -39.18 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.50 Total: -0.20 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -0.46 Total: -9.52 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -1.20 Total: -50.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.31 -8.88 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044536991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.978 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds