Wall clock time and date at job start Mon Mar 30 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46842 * 111.00010 * 2 1 4 4 C 1.53037 * 109.52259 * 185.83686 * 3 2 1 5 5 C 1.53116 * 109.27684 * 300.81276 * 4 3 2 6 6 C 1.53125 * 109.16013 * 57.65848 * 5 4 3 7 7 H 1.09007 * 109.50183 * 62.32174 * 6 5 4 8 8 C 1.52995 * 109.50443 * 182.40056 * 6 5 4 9 9 N 1.46906 * 109.46978 * 184.99998 * 8 6 5 10 10 C 1.46901 * 110.99793 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46921 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.46851 * 110.99675 * 124.20098 * 2 1 3 20 20 H 1.09006 * 109.46711 * 56.05482 * 1 2 3 21 21 H 1.09001 * 109.47176 * 176.05035 * 1 2 3 22 22 H 1.08995 * 109.47686 * 296.05158 * 1 2 3 23 23 H 1.08996 * 109.46712 * 65.81701 * 3 2 1 24 24 H 1.09003 * 109.45900 * 305.84766 * 3 2 1 25 25 H 1.08998 * 109.50305 * 180.87680 * 4 3 2 26 26 H 1.08996 * 109.53703 * 60.78003 * 4 3 2 27 27 H 1.08997 * 109.52821 * 297.75212 * 5 4 3 28 28 H 1.09007 * 109.52454 * 177.55787 * 5 4 3 29 29 H 1.08995 * 109.46859 * 65.00290 * 8 6 5 30 30 H 1.09002 * 109.47639 * 304.99958 * 8 6 5 31 31 H 1.00898 * 110.99995 * 303.95410 * 9 8 6 32 32 H 1.09002 * 109.47401 * 59.99808 * 10 9 8 33 33 H 1.09001 * 109.46874 * 299.99821 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.09009 * 109.46043 * 54.14874 * 19 2 1 36 36 H 1.08993 * 109.46612 * 294.18021 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1187 0.5371 1.0146 6 6 3.5180 -0.8714 1.0211 7 1 3.7819 -1.3839 0.0960 8 6 4.0679 -1.6557 2.2142 9 7 3.5856 -3.0420 2.1531 10 6 4.0942 -3.8267 3.2861 11 6 3.5792 -5.2397 3.1899 12 1 2.9385 -5.5262 2.3691 13 6 3.9268 -6.1669 4.1493 14 7 4.7074 -5.8181 5.1486 15 14 3.2890 -7.9185 4.0297 16 1 4.2444 -8.7407 3.2447 17 1 3.1497 -8.4888 5.3938 18 1 1.9658 -7.9186 3.3558 19 6 1.9951 -0.7706 1.1339 20 1 -0.3633 0.5739 -0.8526 21 1 -0.3633 -1.0252 -0.0708 22 1 -0.3634 0.4513 0.9232 23 1 1.7323 1.8609 0.9375 24 1 1.5634 1.9256 -0.8331 25 1 3.9098 2.3511 -0.1310 26 1 3.7819 0.8570 -1.0905 27 1 3.8885 1.0356 1.9561 28 1 5.1997 0.4714 0.8908 29 1 3.7278 -1.1932 3.1408 30 1 5.1574 -1.6483 2.1829 31 1 2.5778 -3.0729 2.1157 32 1 3.7541 -3.3791 4.2199 33 1 5.1840 -3.8343 3.2625 34 1 4.9517 -6.4703 5.8237 35 1 1.5633 -1.7715 1.1245 36 1 1.7323 -0.2707 2.0661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044536991.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:24 Heat of formation + Delta-G solvation = -35.746360 kcal Electronic energy + Delta-G solvation = -14310.411304 eV Core-core repulsion = 12020.548300 eV Total energy + Delta-G solvation = -2289.863004 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19587 -37.20468 -35.06353 -34.03868 -32.03110 -28.77064 -27.70777 -25.94129 -24.05633 -23.19855 -22.16148 -20.59888 -18.59114 -17.01219 -16.70260 -16.49577 -15.76959 -15.48441 -15.35202 -15.04060 -14.63595 -14.03792 -13.86169 -13.61243 -13.37461 -13.13361 -12.98256 -12.67564 -12.57326 -12.22866 -12.04159 -11.96613 -11.60799 -11.48085 -11.18732 -11.04313 -10.67087 -9.28644 -9.13784 -8.23656 -6.35364 1.41078 1.43429 1.54630 2.39815 2.98319 3.09563 3.52190 3.81697 3.91654 4.07570 4.16938 4.35972 4.44646 4.53751 4.57281 4.61113 4.68520 4.83722 4.84697 4.87911 4.98712 5.01301 5.06113 5.10824 5.22689 5.26390 5.34223 5.51096 5.61563 6.00750 6.10208 6.18779 6.42945 6.70754 6.87120 7.35841 8.88191 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049218 B = 0.005782 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.759390 B = 4841.447639 C = 5258.113039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.052 3.948 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.071 4.071 7 H 0.074 0.926 8 C 0.067 3.933 9 N -0.688 5.688 10 C 0.207 3.793 11 C -0.538 4.538 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.976 3.024 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.066 3.934 20 H 0.084 0.916 21 H 0.066 0.934 22 H 0.024 0.976 23 H 0.030 0.970 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.333 0.667 32 H -0.041 1.041 33 H 0.000 1.000 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 14.418 -9.600 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.278 5.278 3 C -0.075 4.075 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.090 4.090 7 H 0.092 0.908 8 C -0.064 4.064 9 N -0.319 5.319 10 C 0.079 3.921 11 C -0.576 4.576 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.800 3.200 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.063 4.063 20 H 0.103 0.897 21 H 0.084 0.916 22 H 0.043 0.957 23 H 0.048 0.952 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.078 0.922 31 H 0.151 0.849 32 H -0.023 1.023 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.415 13.931 -10.305 18.155 hybrid contribution -0.794 -0.284 1.958 2.132 sum -6.210 13.647 -8.347 17.160 Atomic orbital electron populations 1.22402 0.86383 1.02605 1.00981 1.61915 1.08507 1.14441 1.42986 1.22200 0.96073 0.88450 1.00798 1.21558 0.94087 1.00748 0.98409 1.21605 1.00454 0.94010 0.99133 1.21088 0.94109 0.95984 0.97861 0.90781 1.21974 0.99649 0.88394 0.96341 1.60597 1.14640 1.10743 1.45939 1.19219 0.94238 0.92466 0.86174 1.21553 1.30763 0.95790 1.09478 0.91748 1.25985 0.95200 1.03988 0.94564 1.70095 1.37116 1.36607 1.13687 0.85291 0.79041 0.78234 0.77474 1.19774 1.20569 1.18681 1.22029 0.95268 0.97851 0.91122 0.89742 0.91558 0.95724 0.95177 0.89226 0.89406 0.91391 0.92335 0.91126 0.96888 0.92170 0.84913 1.02311 0.98234 0.92556 0.91611 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.59 127.69 1.22 1.71 16 2 N -0.55 -13.41 4.91 -922.60 -4.53 -17.94 16 3 C 0.05 1.03 5.46 86.33 0.47 1.50 16 4 C -0.11 -2.11 6.09 30.65 0.19 -1.93 16 5 C -0.11 -2.68 5.29 30.67 0.16 -2.52 16 6 C -0.07 -2.11 2.56 -10.74 -0.03 -2.14 16 7 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 8 C 0.07 2.47 5.15 86.30 0.44 2.92 16 9 N -0.69 -31.09 6.49 -517.92 -3.36 -34.45 16 10 C 0.21 11.54 5.44 85.56 0.47 12.01 16 11 C -0.54 -31.57 9.32 25.60 0.24 -31.33 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.00 0.04 5.46 84.66 0.46 0.51 16 14 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 15 Si 0.98 44.92 29.54 68.60 2.03 46.95 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 C 0.07 1.86 4.50 86.32 0.39 2.25 16 20 H 0.08 1.36 8.10 -2.38 -0.02 1.34 16 21 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 22 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.33 14.30 7.00 -89.70 -0.63 13.68 16 32 H -0.04 -2.43 8.14 -2.39 -0.02 -2.45 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.07 2.04 6.71 -2.38 -0.02 2.02 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -64.82 286.26 -1.17 -65.99 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.39 Total: 13.71 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.02 Total: -17.03 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -7.61 Total: -109.63 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.82 -1.17 -65.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044536991.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.247 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds