Wall clock time and date at job start Mon Mar 30 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46849 * 111.00144 * 2 1 4 4 C 1.53034 * 109.52514 * 185.84536 * 3 2 1 5 5 C 1.53123 * 109.27633 * 300.82104 * 4 3 2 6 6 C 1.53115 * 109.16152 * 57.65592 * 5 4 3 7 7 C 1.46843 * 111.00550 * 124.21422 * 2 1 3 8 8 H 1.09002 * 109.45084 * 294.17001 * 7 2 1 9 9 C 1.53002 * 109.45997 * 54.14034 * 7 2 1 10 10 N 1.46909 * 109.46867 * 183.42700 * 9 7 2 11 11 C 1.46904 * 110.99764 * 185.19584 * 10 9 7 12 12 C 1.50698 * 109.46664 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00675 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99648 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99983 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99835 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47488 * 89.99905 * 16 14 12 18 18 H 1.48507 * 109.46521 * 209.99734 * 16 14 12 19 19 H 1.48500 * 109.46956 * 329.99523 * 16 14 12 20 20 H 1.09002 * 109.47285 * 289.28762 * 1 2 3 21 21 H 1.09004 * 109.47420 * 49.29223 * 1 2 3 22 22 H 1.09005 * 109.47019 * 169.29086 * 1 2 3 23 23 H 1.08994 * 109.45778 * 65.82320 * 3 2 1 24 24 H 1.09001 * 109.45065 * 305.85242 * 3 2 1 25 25 H 1.08999 * 109.50685 * 180.88609 * 4 3 2 26 26 H 1.08998 * 109.50877 * 60.76024 * 4 3 2 27 27 H 1.09001 * 109.52149 * 297.74903 * 5 4 3 28 28 H 1.09004 * 109.52313 * 177.56373 * 5 4 3 29 29 H 1.09004 * 109.50637 * 182.40860 * 6 5 4 30 30 H 1.08999 * 109.53645 * 62.30794 * 6 5 4 31 31 H 1.08999 * 109.47268 * 63.42976 * 9 7 2 32 32 H 1.09003 * 109.47399 * 303.42213 * 9 7 2 33 33 H 1.00899 * 110.99814 * 61.24140 * 10 9 7 34 34 H 1.08994 * 109.47274 * 300.00261 * 11 10 9 35 35 H 1.09005 * 109.46559 * 60.00279 * 11 10 9 36 36 H 0.97002 * 120.00287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1469 5 6 4.1188 0.5369 1.0142 6 6 3.5182 -0.8715 1.0206 7 6 1.9953 -0.7708 1.1336 8 1 1.7326 -0.2707 2.0658 9 6 1.3891 -2.1755 1.1202 10 7 1.8516 -2.9197 2.2994 11 6 1.3890 -4.3134 2.2571 12 6 1.8823 -5.0436 3.4796 13 1 2.4800 -4.5245 4.2143 14 6 1.5714 -6.3748 3.6597 15 7 2.0023 -7.0122 4.7263 16 14 0.5394 -7.2732 2.3881 17 1 1.4299 -7.8761 1.3640 18 1 -0.2450 -8.3439 3.0541 19 1 -0.3872 -6.3138 1.7352 20 1 -0.3634 0.3394 0.9700 21 1 -0.3634 0.6703 -0.7790 22 1 -0.3633 -1.0098 -0.1910 23 1 1.7324 1.8607 0.9375 24 1 1.5633 1.9255 -0.8331 25 1 3.9099 2.3512 -0.1311 26 1 3.7813 0.8568 -1.0908 27 1 3.8888 1.0354 1.9558 28 1 5.1998 0.4714 0.8903 29 1 3.9099 -1.4304 1.8705 30 1 3.7814 -1.3842 0.0955 31 1 1.7014 -2.6975 0.2157 32 1 0.3017 -2.1023 1.1404 33 1 1.5570 -2.4666 3.1514 34 1 0.2995 -4.3341 2.2360 35 1 1.7791 -4.7986 1.3624 36 1 1.7839 -7.9488 4.8529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044562608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:05 Heat of formation + Delta-G solvation = -28.060236 kcal Electronic energy + Delta-G solvation = -14488.512272 eV Core-core repulsion = 12198.982564 eV Total energy + Delta-G solvation = -2289.529709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.29052 -37.01473 -34.68951 -34.40635 -32.27967 -29.34778 -27.60445 -25.94910 -23.80289 -23.08201 -22.03717 -20.59971 -18.95519 -17.05288 -16.64576 -16.33889 -16.08171 -15.46970 -15.16355 -15.03024 -14.61057 -14.27010 -13.93319 -13.88442 -13.37538 -13.07266 -12.84784 -12.59274 -12.49230 -12.41802 -11.88248 -11.86610 -11.58491 -11.54199 -11.19436 -11.07532 -10.81693 -9.30285 -9.11991 -8.31523 -6.36195 1.34425 1.35522 1.46625 2.32880 2.84784 3.02465 3.60883 3.83688 3.97192 4.03487 4.17564 4.33418 4.41808 4.51171 4.54987 4.63537 4.71201 4.78687 4.86112 4.89598 4.95348 5.01500 5.06906 5.10663 5.15478 5.29485 5.42663 5.49939 5.54163 5.89813 6.14062 6.19753 6.52202 6.62707 6.73922 7.28850 8.85183 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049640 B = 0.006430 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.925276 B = 4353.489152 C = 4709.674793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.101 4.101 7 C 0.100 3.900 8 H 0.031 0.969 9 C 0.066 3.934 10 N -0.683 5.683 11 C 0.178 3.822 12 C -0.529 4.529 13 H 0.038 0.962 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.252 1.252 20 H 0.022 0.978 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.030 0.970 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.335 0.665 34 H -0.014 1.014 35 H 0.023 0.977 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 17.000 -11.718 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.072 4.072 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.139 4.139 7 C -0.008 4.008 8 H 0.049 0.951 9 C -0.064 4.064 10 N -0.314 5.314 11 C 0.049 3.951 12 C -0.567 4.567 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.176 1.176 20 H 0.041 0.959 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.152 0.848 34 H 0.003 0.997 35 H 0.041 0.959 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.040 16.470 -12.342 20.608 hybrid contribution -1.500 -0.414 1.015 1.858 sum -2.539 16.056 -11.327 19.812 Atomic orbital electron populations 1.22445 0.86975 1.02658 1.00592 1.61900 1.08122 1.14387 1.42970 1.22184 0.96191 0.88054 1.00791 1.21587 0.93978 1.00770 0.98673 1.21611 1.00374 0.95018 0.98794 1.21456 0.93200 0.97388 1.01871 1.21421 0.95893 0.92361 0.91148 0.95112 1.22012 0.96376 0.93927 0.94065 1.60259 1.64112 1.02648 1.04360 1.19720 0.92553 0.86964 0.95875 1.21327 1.32899 0.95992 1.06480 0.94346 1.25871 0.97036 0.98290 0.97679 1.70048 1.47701 1.11222 1.29722 0.85660 0.79352 0.78493 0.79081 1.19039 1.20445 1.17612 0.95919 0.89644 0.91806 0.95193 0.89208 0.89651 0.91521 0.92462 0.91056 0.92098 0.92465 0.91717 0.95468 0.84820 0.99683 0.95914 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.89 127.69 1.13 1.59 16 2 N -0.55 -13.45 4.75 -897.18 -4.26 -17.71 16 3 C 0.06 1.08 5.46 86.32 0.47 1.55 16 4 C -0.11 -2.08 6.09 30.65 0.19 -1.89 16 5 C -0.12 -2.66 6.00 30.67 0.18 -2.48 16 6 C -0.10 -2.90 5.24 30.65 0.16 -2.74 16 7 C 0.10 2.90 2.09 44.94 0.09 3.00 16 8 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 9 C 0.07 2.25 4.78 86.30 0.41 2.67 16 10 N -0.68 -28.66 5.86 -517.90 -3.04 -31.69 16 11 C 0.18 8.72 4.50 85.56 0.38 9.10 16 12 C -0.53 -31.25 9.87 25.60 0.25 -31.00 16 13 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 14 C 0.01 0.53 5.47 84.66 0.46 0.99 16 15 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 16 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 20 H 0.02 0.49 8.12 -2.39 -0.02 0.47 16 21 H 0.08 1.46 7.97 -2.38 -0.02 1.44 16 22 H 0.06 1.48 6.54 -2.38 -0.02 1.47 16 23 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.09 1.43 8.01 -2.39 -0.02 1.41 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 32 H 0.03 0.90 6.27 -2.39 -0.01 0.88 16 33 H 0.33 13.80 8.78 -89.69 -0.79 13.02 16 34 H -0.01 -0.70 7.20 -2.39 -0.02 -0.72 16 35 H 0.02 1.12 7.57 -2.38 -0.02 1.10 16 36 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -65.04 280.85 -1.18 -66.22 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.19 Total: 15.31 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.74 Total: -19.20 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -6.99 Total: -108.90 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -65.04 -1.18 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044562608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.156 kcal (2) G-P(sol) polarization free energy of solvation -65.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds