Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46836 * 111.00057 * 2 1 4 4 C 1.53041 * 109.52521 * 174.15766 * 3 2 1 5 5 C 1.53115 * 109.27697 * 59.18025 * 4 3 2 6 6 C 1.53123 * 109.15357 * 302.34159 * 5 4 3 7 7 C 1.46852 * 111.00212 * 235.78762 * 2 1 3 8 8 H 1.09005 * 109.45486 * 65.83416 * 7 2 1 9 9 C 1.53001 * 109.46358 * 305.86188 * 7 2 1 10 10 N 1.46899 * 109.47049 * 176.33297 * 9 7 2 11 11 C 1.46894 * 110.99916 * 174.86561 * 10 9 7 12 12 C 1.50701 * 109.47231 * 180.02562 * 11 10 9 13 13 H 1.07995 * 119.99977 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00212 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00108 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99862 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47186 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46801 * 120.00332 * 16 14 12 19 19 H 1.48494 * 109.47004 * 240.00029 * 16 14 12 20 20 H 1.09004 * 109.47085 * 190.75428 * 1 2 3 21 21 H 1.08998 * 109.47433 * 310.75378 * 1 2 3 22 22 H 1.08994 * 109.46916 * 70.75732 * 1 2 3 23 23 H 1.08998 * 109.46947 * 294.17729 * 3 2 1 24 24 H 1.09007 * 109.46176 * 54.15740 * 3 2 1 25 25 H 1.08997 * 109.50520 * 179.11966 * 4 3 2 26 26 H 1.09006 * 109.50408 * 299.24131 * 4 3 2 27 27 H 1.09004 * 109.52241 * 62.24955 * 5 4 3 28 28 H 1.08995 * 109.52539 * 182.37791 * 5 4 3 29 29 H 1.08992 * 109.51113 * 297.72543 * 6 5 4 30 30 H 1.08995 * 109.49336 * 177.60496 * 6 5 4 31 31 H 1.09003 * 109.47388 * 56.33121 * 9 7 2 32 32 H 1.09001 * 109.46940 * 296.33445 * 9 7 2 33 33 H 1.00893 * 111.00283 * 298.82141 * 10 9 7 34 34 H 1.08999 * 109.47318 * 60.00316 * 11 10 9 35 35 H 1.09003 * 109.47852 * 300.00337 * 11 10 9 36 36 H 0.97001 * 120.00569 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5369 -1.0142 6 6 3.5181 -0.8715 -1.0205 7 6 1.9953 -0.7708 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3891 -2.1755 -1.1204 10 7 1.8470 -2.9177 -2.3026 11 6 1.3833 -4.3109 -2.2617 12 6 1.8718 -5.0391 -3.4874 13 1 2.4675 -4.5191 -4.2228 14 6 1.5581 -6.3693 -3.6697 15 7 0.8322 -7.0025 -2.7744 16 14 2.1631 -7.2717 -5.1894 17 1 2.9534 -6.3418 -6.0354 18 1 3.0179 -8.4145 -4.7788 19 1 0.9993 -7.7764 -5.9614 20 1 -0.3633 -1.0096 0.1918 21 1 -0.3634 0.6708 0.7784 22 1 -0.3633 0.3387 -0.9702 23 1 1.7325 1.8608 -0.9375 24 1 1.5635 1.9256 0.8332 25 1 3.9099 2.3511 0.1311 26 1 3.7814 0.8566 1.0907 27 1 3.8887 1.0354 -1.9559 28 1 5.1999 0.4723 -0.8910 29 1 3.7811 -1.3836 -0.0950 30 1 3.9101 -1.4303 -1.8703 31 1 0.3016 -2.1022 -1.1362 32 1 1.7048 -2.6990 -0.2180 33 1 1.5500 -2.4625 -3.1527 34 1 0.2937 -4.3306 -2.2371 35 1 1.7756 -4.7985 -1.3693 36 1 0.6119 -7.9385 -2.9024 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044562609.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = -10.448570 kcal Electronic energy + Delta-G solvation = -14441.677624 eV Core-core repulsion = 12152.911615 eV Total energy + Delta-G solvation = -2288.766010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13231 -35.18994 -33.43277 -32.58312 -30.64349 -27.22263 -26.37412 -24.38162 -22.70529 -21.49869 -20.70159 -19.47817 -16.42758 -15.63060 -15.23985 -14.82245 -14.47328 -14.34178 -14.00979 -13.43675 -12.91605 -12.67195 -12.52170 -12.18560 -11.86979 -11.57030 -11.41920 -11.25113 -10.77979 -10.71271 -10.65738 -10.44071 -10.19121 -10.02133 -9.82065 -9.13172 -8.46666 -8.18983 -7.24588 -6.01785 -4.03666 3.31943 3.39074 3.44211 3.99333 4.45111 4.89198 4.96927 5.04757 5.24178 5.34183 5.39757 5.44610 5.51566 5.62094 5.65757 5.73232 5.86345 5.90156 5.99069 6.06080 6.11829 6.24202 6.38985 6.44756 6.50874 6.75075 7.20157 7.26624 7.31573 7.45418 7.80479 8.14670 8.40954 8.63312 9.06019 9.61261 11.09446 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052923 B = 0.005963 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.946102 B = 4694.495154 C = 5055.288408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.102 4.102 7 C 0.092 3.908 8 H 0.034 0.966 9 C 0.064 3.936 10 N -0.687 5.687 11 C 0.195 3.805 12 C -0.513 4.513 13 H 0.063 0.937 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.022 0.978 23 H 0.028 0.972 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.326 0.674 34 H -0.015 1.015 35 H 0.028 0.972 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 15.524 4.778 16.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.016 4.016 8 H 0.052 0.948 9 C -0.066 4.066 10 N -0.317 5.317 11 C 0.069 3.931 12 C -0.551 4.551 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.727 3.273 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.092 0.908 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.734 14.962 5.524 16.182 hybrid contribution -1.082 -0.100 -1.675 1.997 sum 1.651 14.862 3.849 15.441 Atomic orbital electron populations 1.22402 0.87762 1.02688 0.99704 1.61898 1.07298 1.12999 1.44308 1.22058 0.95755 0.89389 0.99833 1.21591 0.94433 0.99681 0.99717 1.21638 0.99789 0.96813 0.97879 1.21508 0.93324 0.95656 1.03446 1.21631 0.95775 0.93942 0.90287 0.94803 1.21951 0.95776 0.92568 0.96317 1.60566 1.63934 1.04781 1.02461 1.19538 0.93066 0.82580 0.97945 1.21230 1.32578 0.95290 1.06036 0.91920 1.24997 0.95248 0.97574 0.96812 1.69974 1.38280 1.10608 1.34919 0.86429 0.78457 0.79654 0.82797 1.19665 1.20981 1.21127 0.90759 0.91952 0.95923 0.95401 0.91226 0.92116 0.91202 0.92683 0.92043 0.91550 0.89789 0.96331 0.91039 0.85840 0.99747 0.95355 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.89 60.07 0.53 0.82 16 2 N -0.54 -7.56 4.75 -234.93 -1.11 -8.67 16 3 C 0.06 0.68 5.46 -3.84 -0.02 0.66 16 4 C -0.12 -1.28 6.09 -26.65 -0.16 -1.45 16 5 C -0.12 -1.50 6.00 -26.61 -0.16 -1.66 16 6 C -0.10 -1.52 5.24 -26.65 -0.14 -1.66 16 7 C 0.09 1.43 2.09 -67.72 -0.14 1.29 16 8 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 9 C 0.06 1.19 4.78 -3.82 -0.02 1.17 16 10 N -0.69 -14.94 5.87 -115.06 -0.68 -15.61 16 11 C 0.20 5.22 5.43 -4.98 -0.03 5.19 16 12 C -0.51 -14.70 9.32 -34.44 -0.32 -15.02 16 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 16 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 21 H 0.06 0.67 7.97 -51.93 -0.41 0.26 16 22 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 23 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.07 0.72 8.01 -51.92 -0.42 0.30 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 31 H 0.02 0.35 6.26 -51.93 -0.32 0.02 16 32 H 0.07 1.42 8.13 -51.93 -0.42 0.99 16 33 H 0.33 6.80 8.78 -39.30 -0.34 6.46 16 34 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 284.46 15.07 4.29 4.29 Total: -1.00 -29.77 284.46 -8.78 -38.54 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.43 Total: 0.23 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.55 Total: -9.17 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -1.05 Total: -50.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.77 -8.78 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044562609.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.094 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds