Wall clock time and date at job start Mon Mar 30 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46896 * 109.47204 * 2 1 4 4 C 1.46955 * 111.00233 * 190.00090 * 3 2 1 5 5 C 1.53049 * 109.36962 * 176.80960 * 4 3 2 6 6 N 1.46956 * 109.37889 * 58.38792 * 5 4 3 7 7 C 1.46901 * 110.99929 * 176.82469 * 6 5 4 8 8 H 1.09009 * 109.47251 * 300.00289 * 7 6 5 9 9 C 1.52997 * 109.47136 * 60.00034 * 7 6 5 10 10 C 1.50693 * 109.47416 * 180.02562 * 7 6 5 11 11 H 1.08004 * 120.00328 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00466 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99842 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00349 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.47495 * 59.99801 * 14 12 10 16 16 H 1.48500 * 109.47312 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47104 * 299.99795 * 14 12 10 18 18 C 1.46957 * 110.88202 * 300.71439 * 6 5 4 19 19 C 1.46955 * 111.00423 * 66.20027 * 3 2 1 20 20 H 1.09002 * 109.47100 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47295 * 299.99729 * 1 2 3 22 22 H 1.08998 * 109.47198 * 60.00176 * 1 2 3 23 23 H 1.08998 * 109.46965 * 239.99740 * 2 1 3 24 24 H 1.09007 * 109.47084 * 119.99828 * 2 1 3 25 25 H 1.09005 * 109.49150 * 56.83886 * 4 3 2 26 26 H 1.08999 * 109.50586 * 296.79217 * 4 3 2 27 27 H 1.09002 * 109.49200 * 178.36943 * 5 4 3 28 28 H 1.09002 * 109.48985 * 298.41362 * 5 4 3 29 29 H 1.08999 * 109.47384 * 59.99996 * 9 7 6 30 30 H 1.09007 * 109.47209 * 179.97438 * 9 7 6 31 31 H 1.09000 * 109.47135 * 300.00446 * 9 7 6 32 32 H 0.96997 * 119.99953 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.47347 * 299.31758 * 18 6 5 34 34 H 1.09002 * 109.50396 * 179.27890 * 18 6 5 35 35 H 1.09002 * 109.48806 * 303.15815 * 19 3 2 36 36 H 1.09002 * 109.48581 * 63.19765 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4690 1.4311 -0.2383 5 6 3.9254 2.8902 -0.3100 6 7 3.5789 3.5718 0.9451 7 6 4.0685 4.9568 0.9445 8 1 5.1529 4.9588 0.8335 9 6 3.4353 5.7211 -0.2198 10 6 3.6959 5.6218 2.2444 11 1 3.1496 5.0709 2.9958 12 6 4.0514 6.9340 2.4743 13 7 4.7162 7.6051 1.5592 14 14 3.5902 7.7581 4.0859 15 1 4.2062 7.0164 5.2154 16 1 4.0839 9.1587 4.0848 17 1 2.1130 7.7548 4.2386 18 6 2.1295 3.5252 1.1835 19 6 1.6733 2.0661 1.2552 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8932 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 3.6990 0.9315 -1.1794 26 1 3.9881 0.9274 0.5771 27 1 5.0047 2.9269 -0.4577 28 1 3.4272 3.3866 -1.1428 29 1 2.3509 5.7191 -0.1089 30 1 3.7982 6.7490 -0.2199 31 1 3.7051 5.2399 -1.1599 32 1 4.9661 8.5283 1.7208 33 1 1.6107 4.0289 0.3680 34 1 1.8993 4.0249 2.1245 35 1 0.5939 2.0294 1.4030 36 1 2.1714 1.5694 2.0879 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:01 Heat of formation + Delta-G solvation = -9.599804 kcal Electronic energy + Delta-G solvation = -14997.703592 eV Core-core repulsion = 12708.974388 eV Total energy + Delta-G solvation = -2288.729204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35489 -37.47127 -34.72811 -32.35549 -31.75022 -29.90953 -27.40309 -26.39300 -24.49924 -22.93015 -22.01416 -20.21301 -18.21301 -17.37231 -16.49617 -16.12363 -15.81925 -15.48568 -15.43798 -14.76056 -14.43983 -14.30194 -13.62604 -13.34043 -12.98222 -12.76681 -12.65285 -12.59477 -12.54205 -12.26575 -12.09820 -11.99009 -11.86895 -11.51871 -11.23552 -10.83158 -10.49188 -9.27500 -8.84565 -8.10848 -6.22272 1.42863 1.44472 1.52034 2.42917 2.99902 3.18163 3.38528 4.04226 4.08394 4.24609 4.35199 4.45910 4.50904 4.60385 4.67419 4.70281 4.74572 4.86876 4.90195 4.95232 5.05612 5.06740 5.15358 5.16054 5.25215 5.40334 5.54962 5.70831 5.78497 6.09611 6.18980 6.21332 6.49272 6.75715 6.91425 7.46987 8.95433 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048678 B = 0.007897 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.064662 B = 3544.685943 C = 3877.246476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.551 5.551 4 C 0.069 3.931 5 C 0.053 3.947 6 N -0.543 5.543 7 C 0.215 3.785 8 H 0.005 0.995 9 C -0.154 4.154 10 C -0.519 4.519 11 H 0.058 0.942 12 C 0.011 3.989 13 N -0.921 5.921 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.069 3.931 19 C 0.066 3.934 20 H 0.076 0.924 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.020 0.980 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -12.705 -2.816 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.276 5.276 4 C -0.060 4.060 5 C -0.076 4.076 6 N -0.267 5.267 7 C 0.107 3.893 8 H 0.023 0.977 9 C -0.213 4.213 10 C -0.557 4.557 11 H 0.077 0.923 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.060 4.060 19 C -0.062 4.062 20 H 0.095 0.905 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.050 0.950 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.258 -12.546 -2.844 14.306 hybrid contribution 0.144 0.960 0.686 1.188 sum -6.114 -11.587 -2.158 13.277 Atomic orbital electron populations 1.21768 0.93992 1.02361 1.02016 1.22144 0.96869 0.87631 1.01113 1.62211 1.13961 1.16856 1.34597 1.22087 0.87408 0.95301 1.01166 1.22141 0.99690 0.94531 0.91225 1.62407 1.13707 1.17571 1.33052 1.19036 0.93334 0.83124 0.93759 0.97673 1.22157 0.98754 1.03024 0.97377 1.21379 1.35963 0.96700 1.01688 0.92341 1.25715 0.95096 0.97900 1.00029 1.70013 1.40107 1.10611 1.35326 0.85584 0.78682 0.77254 0.79939 1.19782 1.20965 1.19583 1.21956 0.88164 0.95681 1.00165 1.22151 1.00627 0.93307 0.90119 0.90479 0.93094 0.92518 0.89759 0.94975 0.88653 0.94811 0.91453 0.95422 0.95498 0.92037 0.95592 0.92951 0.96201 0.91456 0.89133 0.95098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.85 71.98 0.71 -2.01 16 2 C 0.05 1.09 5.68 86.30 0.49 1.58 16 3 N -0.55 -16.11 4.71 -895.74 -4.22 -20.33 16 4 C 0.07 2.06 5.61 86.31 0.48 2.54 16 5 C 0.05 1.98 5.13 86.31 0.44 2.42 16 6 N -0.54 -24.15 4.73 -874.88 -4.14 -28.29 16 7 C 0.21 11.25 2.42 44.17 0.11 11.36 16 8 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 9 C -0.15 -7.78 8.27 71.98 0.60 -7.18 16 10 C -0.52 -29.01 7.89 25.60 0.20 -28.80 16 11 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 12 C 0.01 0.62 5.30 84.65 0.45 1.07 16 13 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 14 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.07 2.80 4.93 86.31 0.43 3.23 16 19 C 0.07 2.12 5.41 86.31 0.47 2.59 16 20 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.01 6.49 -2.38 -0.02 0.99 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 24 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 25 H 0.10 2.35 8.07 -2.38 -0.02 2.33 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.09 6.48 -2.39 -0.02 1.07 16 29 H 0.03 1.32 6.56 -2.39 -0.02 1.30 16 30 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 31 H 0.03 1.18 6.48 -2.39 -0.02 1.16 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.02 0.85 6.56 -2.39 -0.02 0.84 16 34 H 0.07 2.96 6.14 -2.39 -0.01 2.95 16 35 H 0.09 2.54 6.34 -2.39 -0.02 2.53 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -60.61 271.03 -0.68 -61.29 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.04 Total: 7.89 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.37 Total: -13.20 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -8.11 Total: -102.07 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.61 -0.68 -61.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.691 kcal (2) G-P(sol) polarization free energy of solvation -60.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds