Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.35829 * 119.62424 * 90.00050 * 10 9 7 12 12 C 1.35435 * 120.68406 * 180.02562 * 11 10 9 13 13 Cl 1.73604 * 120.03413 * 179.97438 * 12 11 10 14 14 C 1.40263 * 119.92658 * 359.97388 * 12 11 10 15 15 C 1.36398 * 119.26366 * 0.02562 * 14 12 11 16 16 C 1.34658 * 119.62678 * 269.72426 * 10 9 7 17 17 O 1.22068 * 119.97181 * 359.97438 * 16 10 9 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08004 * 119.65515 * 359.97438 * 11 10 9 22 22 H 1.07996 * 120.36734 * 180.02562 * 14 12 11 23 23 H 1.08004 * 120.33826 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6392 -4.1230 1.1813 12 6 3.5195 -5.1519 1.2063 13 17 4.0665 -5.7907 2.7251 14 6 3.9888 -5.7008 0.0039 15 6 3.5490 -5.1864 -1.1803 16 6 2.6312 -4.1223 -1.1700 17 8 2.2256 -3.6564 -2.2228 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.2810 -3.7034 2.1098 22 1 4.6905 -6.5216 0.0155 23 1 3.8986 -5.5960 -2.1165 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057792385.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -16.080994 kcal Electronic energy + Delta-G solvation = -11748.985794 eV Core-core repulsion = 9395.466763 eV Total energy + Delta-G solvation = -2353.519031 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64053 -36.78844 -35.81053 -34.30364 -32.52414 -29.30781 -27.72768 -24.22001 -23.09284 -21.64341 -17.17636 -16.97242 -16.73233 -15.89493 -14.85035 -14.81030 -13.97330 -13.69442 -12.55238 -12.47696 -12.42313 -12.19718 -11.56951 -11.31271 -10.84004 -10.74634 -10.66087 -10.36406 -10.03265 -9.28524 -9.19537 -8.65934 -7.38698 -6.28429 -4.36106 1.24331 2.12510 2.32034 3.21502 3.27718 3.30063 3.60345 4.13744 4.29620 4.97427 5.06683 5.10925 5.29806 5.61444 6.12013 6.30843 6.39062 6.68238 6.98861 7.09150 7.65167 7.79734 7.84668 8.61543 8.71876 9.30328 10.80155 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.035849 B = 0.009169 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.873193 B = 3053.106669 C = 3465.505630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.218 3.782 10 N -0.464 5.464 11 C 0.184 3.816 12 C -0.185 4.185 13 Cl -0.071 7.071 14 C -0.013 4.013 15 C -0.244 4.244 16 C 0.506 3.494 17 O -0.539 6.539 18 H 0.268 0.732 19 H 0.050 0.950 20 H 0.065 0.935 21 H 0.166 0.834 22 H 0.134 0.866 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -9.522 4.829 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.100 3.900 10 N -0.170 5.170 11 C 0.049 3.951 12 C -0.217 4.217 13 Cl -0.043 7.043 14 C -0.036 4.036 15 C -0.267 4.267 16 C 0.307 3.693 17 O -0.421 6.421 18 H 0.078 0.922 19 H 0.068 0.932 20 H 0.083 0.917 21 H 0.183 0.817 22 H 0.152 0.848 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.623 -9.076 4.225 11.482 hybrid contribution 0.540 0.827 0.248 1.019 sum 6.164 -8.248 4.474 11.227 Atomic orbital electron populations 1.69917 1.06078 1.27727 1.48829 1.24918 0.94989 0.99528 0.94212 0.86342 0.79629 0.82120 0.78520 1.20229 1.20828 1.19641 1.21206 0.93492 0.89669 1.53430 0.91852 1.20042 0.87541 0.81780 1.00608 1.46207 1.36630 1.29094 1.05044 1.21816 0.91108 0.90493 0.91686 1.19653 1.09605 1.04882 0.87542 1.98315 1.89358 1.86203 1.30427 1.21098 0.95388 0.96707 0.90361 1.22061 1.04326 1.01306 0.99018 1.17124 0.83836 0.84816 0.83562 1.90948 1.59156 1.62512 1.29477 0.92204 0.93176 0.91730 0.81698 0.84821 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.14 13.29 55.43 0.74 -24.40 14 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 14 3 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 14 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.27 -6.21 7.11 56.52 0.40 -5.80 14 7 C -0.54 -14.72 9.38 -34.44 -0.32 -15.04 14 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 14 9 C 0.22 5.42 5.09 -5.19 -0.03 5.40 14 10 N -0.46 -9.88 2.57 -121.02 -0.31 -10.19 14 11 C 0.18 3.15 10.04 -16.78 -0.17 2.99 14 12 C -0.18 -2.77 6.29 -39.82 -0.25 -3.02 14 13 Cl -0.07 -0.91 28.95 -51.86 -1.50 -2.41 14 14 C -0.01 -0.19 9.90 -39.48 -0.39 -0.58 14 15 C -0.24 -4.14 9.99 -39.39 -0.39 -4.54 14 16 C 0.51 11.08 7.40 -15.45 -0.11 10.97 14 17 O -0.54 -14.10 16.63 4.86 0.08 -14.02 14 18 H 0.27 7.15 8.31 -40.82 -0.34 6.81 14 19 H 0.05 1.20 8.01 -51.93 -0.42 0.79 14 20 H 0.06 1.80 7.38 -51.93 -0.38 1.42 14 21 H 0.17 2.50 8.04 -52.48 -0.42 2.08 14 22 H 0.13 1.46 8.06 -52.49 -0.42 1.04 14 23 H 0.15 2.18 8.06 -52.48 -0.42 1.75 14 LS Contribution 231.52 15.07 3.49 3.49 Total: -1.00 -30.29 231.52 -5.90 -36.19 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: -1.61 Total: -2.69 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.76 Total: -2.07 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.43 Total: -34.60 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.29 -5.90 -36.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057792385.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.109 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds