Wall clock time and date at job start Mon Mar 30 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86805 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47126 * 239.99850 * 3 2 1 5 5 H 1.48499 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46852 * 120.00259 * 3 2 1 7 7 C 1.38644 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00317 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.35770 * 117.00236 * 185.07398 * 9 7 2 11 11 C 1.38751 * 120.03281 * 354.40449 * 10 9 7 12 12 C 1.38749 * 119.87148 * 180.27522 * 11 10 9 13 13 N 1.39733 * 120.02935 * 179.97438 * 12 11 10 14 14 C 1.38986 * 119.94024 * 0.02562 * 12 11 10 15 15 C 1.38166 * 120.07197 * 359.97438 * 14 12 11 16 16 C 1.38244 * 120.13151 * 359.97438 * 15 14 12 17 17 Cl 1.73602 * 119.97434 * 179.97438 * 16 15 14 18 18 H 0.96999 * 119.99616 * 359.97438 * 1 2 3 19 19 H 1.07997 * 120.06740 * 0.25590 * 11 10 9 20 20 H 0.96995 * 119.99942 * 180.02562 * 13 12 11 21 21 H 0.97005 * 119.99631 * 0.04944 * 13 12 11 22 22 H 1.08002 * 119.96242 * 179.97438 * 14 12 11 23 23 H 1.08008 * 119.92914 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0890 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0702 -3.5046 0.1059 11 6 3.4560 -3.4389 0.0915 12 6 4.2042 -4.6028 0.1947 13 7 5.6001 -4.5404 0.1800 14 6 3.5640 -5.8309 0.3117 15 6 2.1838 -5.8936 0.3259 16 6 1.4355 -4.7357 0.2243 17 17 -0.2985 -4.8192 0.2418 18 1 -0.4849 0.8401 0.0004 19 1 3.9515 -2.4836 -0.0003 20 1 6.1227 -5.3544 0.2518 21 1 6.0464 -3.6831 0.0982 22 1 4.1460 -6.7371 0.3917 23 1 1.6887 -6.8492 0.4165 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059563424.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:40 Heat of formation + Delta-G solvation = -34.572741 kcal Electronic energy + Delta-G solvation = -11706.877929 eV Core-core repulsion = 9352.557036 eV Total energy + Delta-G solvation = -2354.320893 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.78401 -38.52803 -37.11758 -34.89072 -34.12647 -30.74895 -29.26295 -27.22800 -23.54766 -22.77797 -19.99350 -18.99877 -17.56638 -16.97657 -16.65308 -15.84284 -15.67168 -15.66751 -14.68158 -14.29348 -13.67975 -13.55963 -12.93224 -12.83451 -12.65069 -12.47340 -12.16734 -11.60686 -11.30950 -10.95649 -10.63056 -9.22407 -8.43532 -8.29376 -6.12402 0.60219 0.76182 1.36302 1.47742 1.52705 1.66338 2.19141 2.84334 3.06023 3.17467 3.49547 4.10934 4.39890 4.58756 4.92243 4.96255 5.11844 5.35671 5.49789 5.56930 5.93642 6.02436 6.62468 6.99431 7.11527 7.77878 8.78314 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.028618 B = 0.011683 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.183741 B = 2396.149196 C = 3362.500032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.209 6.209 10 C 0.161 3.839 11 C -0.316 4.316 12 C 0.263 3.737 13 N -0.859 5.859 14 C -0.254 4.254 15 C -0.019 4.019 16 C -0.179 4.179 17 Cl -0.097 7.097 18 H 0.272 0.728 19 H 0.125 0.875 20 H 0.411 0.589 21 H 0.403 0.597 22 H 0.158 0.842 23 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.230 -8.024 0.634 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.113 6.113 10 C 0.108 3.892 11 C -0.340 4.340 12 C 0.156 3.844 13 N -0.399 5.399 14 C -0.276 4.276 15 C -0.038 4.038 16 C -0.208 4.208 17 Cl -0.069 7.069 18 H 0.081 0.919 19 H 0.143 0.857 20 H 0.242 0.758 21 H 0.232 0.768 22 H 0.175 0.825 23 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.637 -7.851 0.612 12.445 hybrid contribution 0.118 0.938 -0.041 0.947 sum 9.755 -6.913 0.571 11.969 Atomic orbital electron populations 1.70213 1.08041 1.28788 1.48071 1.26578 0.96773 1.02671 0.95729 0.84659 0.77388 0.74317 0.79891 1.18091 1.19873 1.18164 1.21817 0.92580 0.81390 1.53449 0.87930 1.84039 1.35211 1.12209 1.79884 1.19300 0.90895 0.87055 0.91981 1.20496 0.92177 0.98951 1.22416 1.17608 0.85120 0.92539 0.89136 1.42367 1.01743 1.12487 1.83322 1.20503 0.93391 0.96591 1.17159 1.20731 0.93452 0.95652 0.94015 1.20107 0.83723 0.93213 1.23751 1.98266 1.12150 1.98602 1.97904 0.91898 0.85705 0.75771 0.76760 0.82479 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.34 13.67 21.61 0.30 -56.05 14 2 C -0.02 -1.08 5.49 84.83 0.47 -0.62 14 3 Si 1.02 42.53 29.55 68.60 2.03 44.55 14 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 14 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 7 C -0.42 -24.09 9.49 67.92 0.64 -23.44 14 8 H 0.10 5.38 5.20 -2.91 -0.02 5.37 14 9 O -0.21 -12.54 9.21 -22.93 -0.21 -12.75 14 10 C 0.16 8.09 6.64 22.58 0.15 8.24 14 11 C -0.32 -13.46 9.01 22.51 0.20 -13.26 14 12 C 0.26 8.60 6.75 38.18 0.26 8.86 14 13 N -0.86 -19.20 9.09 -51.38 -0.47 -19.67 14 14 C -0.25 -7.53 9.89 22.43 0.22 -7.31 14 15 C -0.02 -0.65 9.81 22.25 0.22 -0.43 14 16 C -0.18 -7.90 6.34 22.46 0.14 -7.75 14 17 Cl -0.10 -4.32 28.50 -2.72 -0.08 -4.40 14 18 H 0.27 15.43 8.31 -92.71 -0.77 14.66 14 19 H 0.13 5.36 5.63 -2.91 -0.02 5.34 14 20 H 0.41 6.39 8.84 -92.71 -0.82 5.57 14 21 H 0.40 8.15 8.84 -92.70 -0.82 7.33 14 22 H 0.16 3.32 8.06 -2.91 -0.02 3.29 14 23 H 0.15 4.17 8.06 -2.91 -0.02 4.15 14 Total: -1.00 -70.87 227.72 3.50 -67.37 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.37 Total: 16.65 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 2.30 Total: -35.72 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -0.17 Total: -75.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.21 Total: -12.75 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -4.32 SS G_CDS: -0.08 Total: -4.40 kcal Total: -70.87 3.50 -67.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059563424.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.798 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds