Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35604 * 117.00130 * 2 1 4 4 C 1.39140 * 120.59264 * 270.02503 * 3 2 1 5 5 Cl 1.73591 * 120.74561 * 359.97438 * 4 3 2 6 6 C 1.38709 * 118.50800 * 179.97438 * 4 3 2 7 7 C 1.38905 * 119.64739 * 359.97438 * 6 4 3 8 8 N 1.31353 * 121.20323 * 359.73710 * 7 6 4 9 9 C 1.33725 * 121.59753 * 0.53588 * 8 7 6 10 10 C 1.41045 * 119.89005 * 179.75260 * 9 8 7 11 11 H 1.08002 * 120.00497 * 179.72407 * 10 9 8 12 12 C 1.40050 * 119.99669 * 359.43839 * 10 9 8 13 13 N 1.30764 * 120.00204 * 0.28244 * 12 10 9 14 14 Si 1.86803 * 119.99913 * 180.27689 * 12 10 9 15 15 H 1.48499 * 109.46996 * 60.00821 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00617 * 14 12 10 18 18 H 1.09006 * 109.47039 * 59.99795 * 1 2 3 19 19 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47130 * 300.00032 * 1 2 3 21 21 H 1.08000 * 120.17305 * 180.02562 * 6 4 3 22 22 H 1.08001 * 119.40134 * 180.02562 * 7 6 4 23 23 H 0.97005 * 120.00083 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 2.3657 1.8394 -1.1977 5 17 1.9877 1.0975 -2.7209 6 6 2.9946 3.0747 -1.1473 7 6 3.2859 3.6476 0.0841 8 7 2.9721 3.0431 1.2073 9 6 2.3701 1.8491 1.2158 10 6 2.0540 1.2300 2.4431 11 1 1.5637 0.2677 2.4521 12 6 2.3813 1.8605 3.6501 13 7 2.9749 3.0256 3.6392 14 14 1.9696 1.0371 5.2755 15 1 2.6630 -0.2736 5.3560 16 1 2.4159 1.9033 6.3962 17 1 0.5024 0.8273 5.3666 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 3.2556 3.5887 -2.0606 22 1 3.7753 4.6098 0.1188 23 1 3.2012 3.4624 4.4752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060015277.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -16.078909 kcal Electronic energy + Delta-G solvation = -12009.131804 eV Core-core repulsion = 9655.612863 eV Total energy + Delta-G solvation = -2353.518940 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.79641 -36.42769 -35.68331 -33.76451 -30.30040 -29.52696 -26.53686 -25.36231 -21.82833 -21.34250 -17.72912 -16.56648 -16.00508 -15.04928 -14.69757 -14.53939 -13.23943 -13.00316 -12.61795 -12.36628 -11.92854 -11.46986 -11.38336 -11.06182 -10.92986 -10.59968 -10.45272 -10.10227 -9.47852 -9.11954 -8.07471 -7.77544 -7.67387 -6.61264 -4.70713 2.41447 2.57834 2.99566 3.00793 3.06626 3.08482 3.82126 4.51557 4.86965 5.63473 5.96656 6.03964 6.08490 6.28198 6.29666 6.52069 6.67684 6.95094 7.14721 7.27760 7.60495 8.07103 8.14849 8.56035 8.85206 9.84208 10.08631 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.011335 C = 0.009158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.273356 B = 2469.677231 C = 3056.642233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C -0.072 4.072 4 C 0.029 3.971 5 Cl -0.105 7.105 6 C -0.312 4.312 7 C 0.139 3.861 8 N -0.474 5.474 9 C 0.247 3.753 10 C -0.401 4.401 11 H 0.093 0.907 12 C 0.064 3.936 13 N -0.704 5.704 14 Si 0.914 3.086 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.263 1.263 18 H 0.030 0.970 19 H 0.075 0.925 20 H 0.042 0.958 21 H 0.108 0.892 22 H 0.131 0.869 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -1.263 -2.285 3.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.229 6.229 3 C -0.122 4.122 4 C -0.004 4.004 5 Cl -0.077 7.077 6 C -0.336 4.336 7 C -0.029 4.029 8 N -0.188 5.188 9 C 0.123 3.877 10 C -0.430 4.430 11 H 0.111 0.889 12 C -0.163 4.163 13 N -0.324 5.324 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.187 1.187 18 H 0.048 0.952 19 H 0.094 0.906 20 H 0.060 0.940 21 H 0.126 0.874 22 H 0.149 0.851 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.204 -0.997 -1.440 2.815 hybrid contribution -0.552 -0.492 -0.419 0.850 sum -2.755 -1.489 -1.858 3.642 Atomic orbital electron populations 1.22840 0.82712 1.01052 0.99717 1.85986 1.17631 1.25292 1.93981 1.19435 1.10167 0.91378 0.91188 1.21489 1.00846 0.93934 0.84101 1.98266 1.93449 1.83242 1.32697 1.21203 1.15894 0.97447 0.99105 1.22606 0.94567 0.97966 0.87791 1.68802 1.14639 1.09148 1.26164 1.18844 0.89756 0.88074 0.91054 1.19631 1.30413 1.04094 0.88905 0.88882 1.26185 0.93898 0.94690 1.01520 1.70122 1.22317 1.11129 1.28827 0.86267 0.80116 0.80171 0.79717 1.18569 1.19991 1.18712 0.95158 0.90647 0.93973 0.87393 0.85138 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.13 101.05 1.12 1.74 14 2 O -0.31 -7.39 9.10 -18.51 -0.17 -7.55 14 3 C -0.07 -1.82 5.78 -38.11 -0.22 -2.04 14 4 C 0.03 0.67 6.38 -39.07 -0.25 0.42 14 5 Cl -0.11 -2.10 28.63 -51.86 -1.48 -3.59 14 6 C -0.31 -6.97 9.93 -39.16 -0.39 -7.36 14 7 C 0.14 3.24 11.17 -17.51 -0.20 3.04 14 8 N -0.47 -12.66 7.86 -11.02 -0.09 -12.74 14 9 C 0.25 6.66 6.56 -84.84 -0.56 6.10 14 10 C -0.40 -10.47 8.95 -37.84 -0.34 -10.81 14 11 H 0.09 2.33 7.32 -52.49 -0.38 1.95 14 12 C 0.06 1.57 5.50 -17.33 -0.10 1.48 14 13 N -0.70 -17.91 11.46 55.55 0.64 -17.27 14 14 Si 0.91 17.93 29.56 -169.99 -5.02 12.90 14 15 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 16 H -0.28 -5.22 7.11 56.52 0.40 -4.82 14 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 14 18 H 0.03 0.56 8.14 -51.93 -0.42 0.13 14 19 H 0.08 1.20 8.14 -51.93 -0.42 0.78 14 20 H 0.04 0.82 8.14 -51.93 -0.42 0.40 14 21 H 0.11 2.12 8.06 -52.49 -0.42 1.70 14 22 H 0.13 2.61 8.06 -52.49 -0.42 2.19 14 23 H 0.28 6.36 8.29 -40.82 -0.34 6.02 14 LS Contribution 229.48 15.07 3.46 3.46 Total: -1.00 -28.00 229.48 -5.22 -33.22 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -1.63 Total: -1.00 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.92 Total: -7.42 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.55 Total: -30.01 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.17 Total: -7.55 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.90 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -1.48 Total: -3.59 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.00 -5.22 -33.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060015277.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.139 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds