Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35604 * 117.00130 * 2 1 4 4 C 1.39140 * 120.59264 * 270.02503 * 3 2 1 5 5 Cl 1.73591 * 120.74561 * 359.97438 * 4 3 2 6 6 C 1.38709 * 118.50800 * 179.97438 * 4 3 2 7 7 C 1.38905 * 119.64739 * 359.97438 * 6 4 3 8 8 N 1.31353 * 121.20323 * 359.73710 * 7 6 4 9 9 C 1.33725 * 121.59753 * 0.53588 * 8 7 6 10 10 C 1.41045 * 119.89005 * 179.75260 * 9 8 7 11 11 H 1.08002 * 120.00497 * 179.72407 * 10 9 8 12 12 C 1.40050 * 119.99669 * 359.43839 * 10 9 8 13 13 N 1.30764 * 120.00204 * 0.28244 * 12 10 9 14 14 Si 1.86803 * 119.99913 * 180.27689 * 12 10 9 15 15 H 1.48499 * 109.46996 * 60.00821 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00617 * 14 12 10 18 18 H 1.09006 * 109.47039 * 59.99795 * 1 2 3 19 19 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47130 * 300.00032 * 1 2 3 21 21 H 1.08000 * 120.17305 * 180.02562 * 6 4 3 22 22 H 1.08001 * 119.40134 * 180.02562 * 7 6 4 23 23 H 0.97005 * 120.00083 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 2.3657 1.8394 -1.1977 5 17 1.9877 1.0975 -2.7209 6 6 2.9946 3.0747 -1.1473 7 6 3.2859 3.6476 0.0841 8 7 2.9721 3.0431 1.2073 9 6 2.3701 1.8491 1.2158 10 6 2.0540 1.2300 2.4431 11 1 1.5637 0.2677 2.4521 12 6 2.3813 1.8605 3.6501 13 7 2.9749 3.0256 3.6392 14 14 1.9696 1.0371 5.2755 15 1 2.6630 -0.2736 5.3560 16 1 2.4159 1.9033 6.3962 17 1 0.5024 0.8273 5.3666 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 3.2556 3.5887 -2.0606 22 1 3.7753 4.6098 0.1188 23 1 3.2012 3.4624 4.4752 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060015277.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -33.068491 kcal Electronic energy + Delta-G solvation = -12009.868527 eV Core-core repulsion = 9655.612863 eV Total energy + Delta-G solvation = -2354.255664 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.61478 -38.21264 -37.38824 -35.58538 -32.14192 -31.35569 -28.26355 -27.10873 -23.67872 -23.16190 -19.57544 -18.34911 -17.80426 -16.86965 -16.36781 -16.24363 -14.93107 -14.68254 -14.34070 -14.14811 -13.66471 -13.14260 -13.07618 -12.70782 -12.61418 -12.33021 -12.04492 -11.79172 -11.23371 -10.86523 -9.88917 -9.62029 -9.53416 -8.41597 -6.61359 0.59424 0.76342 1.27795 1.40863 1.52698 1.53495 2.19718 2.70857 3.13984 3.75439 4.22180 4.43657 4.51595 4.66169 4.72320 4.76814 4.92155 5.13948 5.30776 5.45954 5.82084 6.16737 6.32111 6.70729 7.02671 7.98592 8.31574 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.042461 B = 0.011335 C = 0.009158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.273356 B = 2469.677231 C = 3056.642233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.330 6.330 3 C -0.088 4.088 4 C 0.015 3.985 5 Cl -0.076 7.076 6 C -0.303 4.303 7 C 0.126 3.874 8 N -0.506 5.506 9 C 0.216 3.784 10 C -0.433 4.433 11 H 0.092 0.908 12 C 0.024 3.976 13 N -0.740 5.740 14 Si 0.989 3.011 15 H -0.260 1.260 16 H -0.263 1.263 17 H -0.256 1.256 18 H 0.036 0.964 19 H 0.110 0.890 20 H 0.032 0.968 21 H 0.138 0.862 22 H 0.160 0.840 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 -1.611 -2.465 4.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.245 6.245 3 C -0.137 4.137 4 C -0.018 4.018 5 Cl -0.047 7.047 6 C -0.326 4.326 7 C -0.041 4.041 8 N -0.221 5.221 9 C 0.092 3.908 10 C -0.463 4.463 11 H 0.110 0.890 12 C -0.200 4.200 13 N -0.360 5.360 14 Si 0.808 3.192 15 H -0.184 1.184 16 H -0.187 1.187 17 H -0.180 1.180 18 H 0.054 0.946 19 H 0.128 0.872 20 H 0.051 0.949 21 H 0.156 0.844 22 H 0.177 0.823 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.578 -1.334 -1.654 3.341 hybrid contribution -0.450 -0.385 -0.544 0.804 sum -3.028 -1.719 -2.197 4.117 Atomic orbital electron populations 1.23022 0.80505 1.03317 0.99531 1.85909 1.19727 1.24827 1.94050 1.19528 1.10848 0.91805 0.91500 1.21643 1.00666 0.94360 0.85088 1.98265 1.93224 1.82847 1.30374 1.21521 1.14197 0.97010 0.99904 1.23134 0.94345 0.98968 0.87609 1.68763 1.15758 1.09607 1.27933 1.19247 0.90525 0.88762 0.92260 1.19885 1.31878 1.04585 0.89937 0.89019 1.27054 0.93220 0.95082 1.04664 1.70184 1.23165 1.12456 1.30225 0.85158 0.80001 0.78998 0.75048 1.18390 1.18744 1.18045 0.94560 0.87170 0.94901 0.84434 0.82283 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 11.13 113.37 1.26 2.41 14 2 O -0.33 -15.37 9.10 -89.14 -0.81 -16.19 14 3 C -0.09 -4.41 5.78 23.22 0.13 -4.27 14 4 C 0.02 0.70 6.38 22.60 0.14 0.84 14 5 Cl -0.08 -2.88 28.63 -2.72 -0.08 -2.96 14 6 C -0.30 -13.01 9.93 22.54 0.22 -12.79 14 7 C 0.13 5.80 11.17 84.92 0.95 6.75 14 8 N -0.51 -27.33 7.86 -188.77 -1.48 -28.82 14 9 C 0.22 11.86 6.56 40.28 0.26 12.12 14 10 C -0.43 -23.05 8.95 23.40 0.21 -22.84 14 11 H 0.09 4.69 7.32 -2.91 -0.02 4.67 14 12 C 0.02 1.16 5.50 85.29 0.47 1.63 14 13 N -0.74 -38.07 11.46 21.84 0.25 -37.82 14 14 Si 0.99 36.60 29.56 68.60 2.03 38.63 14 15 H -0.26 -9.44 7.11 99.48 0.71 -8.74 14 16 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 17 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 18 H 0.04 1.29 8.14 -2.38 -0.02 1.27 14 19 H 0.11 3.28 8.14 -2.39 -0.02 3.26 14 20 H 0.03 1.27 8.14 -2.39 -0.02 1.25 14 21 H 0.14 5.00 8.06 -2.91 -0.02 4.98 14 22 H 0.16 6.15 8.06 -2.91 -0.02 6.12 14 23 H 0.29 13.15 8.29 -92.70 -0.77 12.38 14 Total: -1.00 -59.75 229.48 4.79 -54.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.23 Total: 8.33 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.66 Total: -16.15 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -1.23 Total: -66.63 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.81 Total: -16.19 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.08 Total: -2.96 kcal Total: -59.75 4.79 -54.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060015277.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -59.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds