Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99861 * 2 1 4 4 C 1.46894 * 111.00243 * 123.95789 * 2 1 3 5 5 H 1.09000 * 110.35246 * 302.78476 * 4 2 1 6 6 C 1.54595 * 110.31236 * 180.63607 * 4 2 1 7 7 C 1.54933 * 102.92350 * 219.12673 * 6 4 2 8 8 N 1.48531 * 103.22763 * 37.41753 * 7 6 4 9 9 C 1.46899 * 111.00205 * 200.28080 * 8 7 6 10 10 C 1.53000 * 109.47071 * 287.39243 * 9 8 7 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99887 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00282 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99993 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47433 * 59.99719 * 15 13 11 17 17 H 1.48509 * 109.47109 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47415 * 299.99770 * 15 13 11 19 19 C 1.47906 * 105.81950 * 320.78990 * 8 7 6 20 20 H 1.08993 * 109.46710 * 296.04220 * 1 2 3 21 21 H 1.09001 * 109.46575 * 56.04068 * 1 2 3 22 22 H 1.08995 * 109.47031 * 176.04248 * 1 2 3 23 23 H 1.09004 * 109.47062 * 189.65497 * 3 2 1 24 24 H 1.08997 * 109.47729 * 309.65918 * 3 2 1 25 25 H 1.09007 * 109.47213 * 69.66656 * 3 2 1 26 26 H 1.09009 * 110.72293 * 337.48868 * 6 4 2 27 27 H 1.09000 * 110.72166 * 100.76363 * 6 4 2 28 28 H 1.08999 * 110.67023 * 278.98045 * 7 6 4 29 29 H 1.09002 * 110.66803 * 155.84952 * 7 6 4 30 30 H 1.08999 * 109.47166 * 47.39286 * 9 8 7 31 31 H 1.08997 * 109.47747 * 167.39430 * 9 8 7 32 32 H 1.08999 * 109.47161 * 300.00046 * 10 9 8 33 33 H 1.09007 * 109.46977 * 60.00038 * 10 9 8 34 34 H 0.97003 * 120.00248 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.91969 * 265.98320 * 19 8 7 36 36 H 1.08996 * 109.91993 * 144.68697 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6148 -0.3619 2.0754 6 6 3.5413 -0.7423 1.1310 7 6 3.9118 -2.1832 1.5633 8 7 2.8783 -3.0148 0.8949 9 6 2.7578 -4.3271 1.5441 10 6 3.9811 -5.1797 1.2018 11 6 3.8578 -6.5257 1.8682 12 1 2.9931 -6.7507 2.4749 13 6 4.8489 -7.4700 1.7034 14 7 5.9016 -7.1962 0.9642 15 14 4.6957 -9.1386 2.5289 16 1 3.4676 -9.8193 2.0453 17 1 5.8832 -9.9662 2.1967 18 1 4.6141 -8.9573 4.0005 19 6 1.6156 -2.2523 1.0026 20 1 -0.3632 0.4512 0.9233 21 1 -0.3632 0.5741 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0715 1.3476 -0.1724 24 1 1.5134 1.9457 -0.7911 25 1 1.7923 1.8386 0.9637 26 1 3.9196 -0.5302 0.1310 27 1 3.9188 -0.0149 1.8497 28 1 3.8487 -2.2883 2.6463 29 1 4.9075 -2.4476 1.2074 30 1 2.6984 -4.1940 2.6243 31 1 1.8562 -4.8265 1.1895 32 1 4.0405 -5.3128 0.1216 33 1 4.8828 -4.6803 1.5564 34 1 6.5987 -7.8606 0.8479 35 1 1.0608 -2.5751 1.8836 36 1 1.0138 -2.4019 0.1062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062965515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = 6.401615 kcal Electronic energy + Delta-G solvation = -14379.448093 eV Core-core repulsion = 12091.412762 eV Total energy + Delta-G solvation = -2288.035331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.18355 -36.24117 -33.26914 -31.33040 -29.18316 -27.94376 -27.20829 -24.41079 -23.15795 -21.45181 -19.83377 -19.74291 -16.48471 -16.17976 -15.49970 -14.73667 -14.43744 -14.29207 -13.84279 -13.79647 -12.68745 -12.45352 -12.33750 -12.28992 -11.93439 -11.73650 -11.36053 -10.99851 -10.96453 -10.83972 -10.71505 -10.64043 -10.50017 -9.75964 -9.31963 -9.09104 -8.36602 -8.29112 -7.72892 -5.94979 -3.97494 3.36068 3.40326 3.42693 3.89565 4.44823 4.62587 4.74278 5.02386 5.11376 5.26081 5.32003 5.40642 5.43698 5.49091 5.60834 5.71564 5.80156 5.83640 5.94004 5.99217 6.11709 6.20994 6.32623 6.49665 6.50975 6.99289 7.01715 7.11438 7.49678 7.57387 7.82050 7.95358 8.14436 8.48460 9.09789 9.65771 11.16418 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072583 B = 0.005532 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.672256 B = 5060.394165 C = 5264.943091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.024 3.976 4 C 0.074 3.926 5 H 0.041 0.959 6 C -0.117 4.117 7 C 0.041 3.959 8 N -0.511 5.511 9 C 0.054 3.946 10 C 0.031 3.969 11 C -0.523 4.523 12 H 0.052 0.948 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.043 3.957 20 H 0.021 0.979 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.021 0.979 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.015 0.985 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 15.152 0.297 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.124 4.124 4 C -0.035 4.035 5 H 0.059 0.941 6 C -0.156 4.156 7 C -0.088 4.088 8 N -0.235 5.235 9 C -0.073 4.073 10 C -0.007 4.007 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.085 4.085 20 H 0.039 0.961 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.537 14.731 -0.741 16.564 hybrid contribution -0.580 -0.446 2.100 2.224 sum -8.118 14.285 1.359 16.486 Atomic orbital electron populations 1.22421 0.87650 1.02535 1.00008 1.62084 1.07549 1.13348 1.42946 1.22382 1.01414 0.88820 0.99779 1.22575 0.95908 0.94294 0.90736 0.94080 1.22627 0.93539 0.97096 1.02289 1.23164 0.97901 0.91212 0.96487 1.64856 1.03316 1.02927 1.52437 1.22518 1.01950 0.88176 0.94670 1.19022 0.91243 0.92788 0.97609 1.21174 1.05486 0.98965 1.30556 0.92929 1.24986 0.95350 0.98549 0.95369 1.69964 1.09338 1.34889 1.39034 0.86667 0.77454 0.84067 0.79834 1.20244 1.21267 1.20343 1.22911 0.93927 0.91074 1.00635 0.96051 0.91501 0.90968 0.91006 0.91673 0.96033 0.89717 0.91828 0.94246 0.89563 0.96109 0.92232 0.95688 0.96623 0.92967 0.94524 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.31 60.07 0.56 0.79 16 2 N -0.54 -6.71 4.79 -241.53 -1.16 -7.86 16 3 C 0.02 0.25 9.17 60.06 0.55 0.80 16 4 C 0.07 1.01 2.72 -66.36 -0.18 0.83 16 5 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 6 C -0.12 -1.63 5.57 -24.87 -0.14 -1.77 16 7 C 0.04 0.70 5.91 -1.90 -0.01 0.69 16 8 N -0.51 -9.91 5.24 -230.45 -1.21 -11.12 16 9 C 0.05 1.19 4.64 -3.82 -0.02 1.18 16 10 C 0.03 0.83 5.06 -27.89 -0.14 0.69 16 11 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 15 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.04 0.69 5.88 -2.75 -0.02 0.67 16 20 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 21 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 22 H 0.07 0.78 6.62 -51.93 -0.34 0.43 16 23 H 0.07 0.72 6.83 -51.93 -0.35 0.37 16 24 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 25 H 0.02 0.20 8.13 -51.92 -0.42 -0.22 16 26 H 0.08 1.21 7.35 -51.92 -0.38 0.83 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.68 7.81 -51.93 -0.41 0.27 16 29 H 0.09 1.59 7.80 -51.93 -0.41 1.19 16 30 H 0.02 0.45 7.83 -51.93 -0.41 0.05 16 31 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.44 7.37 -51.93 -0.38 0.05 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.04 0.57 7.77 -51.93 -0.40 0.17 16 36 H 0.08 1.33 6.67 -51.93 -0.35 0.98 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -30.85 283.97 -8.51 -39.36 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -6.34 Total: -5.00 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 0.19 Total: -9.97 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.63 Total: -45.60 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.85 -8.51 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.765 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds