Wall clock time and date at job start Mon Mar 30 2020 02:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99861 * 2 1 4 4 C 1.46894 * 111.00243 * 123.95789 * 2 1 3 5 5 H 1.09000 * 110.35246 * 302.78476 * 4 2 1 6 6 C 1.54595 * 110.31236 * 180.63607 * 4 2 1 7 7 C 1.54933 * 102.92350 * 219.12673 * 6 4 2 8 8 N 1.48531 * 103.22763 * 37.41753 * 7 6 4 9 9 C 1.46899 * 111.00205 * 200.28080 * 8 7 6 10 10 C 1.53000 * 109.47071 * 287.39243 * 9 8 7 11 11 C 1.50694 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99887 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00282 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99761 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99993 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47433 * 59.99719 * 15 13 11 17 17 H 1.48509 * 109.47109 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47415 * 299.99770 * 15 13 11 19 19 C 1.47906 * 105.81950 * 320.78990 * 8 7 6 20 20 H 1.08993 * 109.46710 * 296.04220 * 1 2 3 21 21 H 1.09001 * 109.46575 * 56.04068 * 1 2 3 22 22 H 1.08995 * 109.47031 * 176.04248 * 1 2 3 23 23 H 1.09004 * 109.47062 * 189.65497 * 3 2 1 24 24 H 1.08997 * 109.47729 * 309.65918 * 3 2 1 25 25 H 1.09007 * 109.47213 * 69.66656 * 3 2 1 26 26 H 1.09009 * 110.72293 * 337.48868 * 6 4 2 27 27 H 1.09000 * 110.72166 * 100.76363 * 6 4 2 28 28 H 1.08999 * 110.67023 * 278.98045 * 7 6 4 29 29 H 1.09002 * 110.66803 * 155.84952 * 7 6 4 30 30 H 1.08999 * 109.47166 * 47.39286 * 9 8 7 31 31 H 1.08997 * 109.47747 * 167.39430 * 9 8 7 32 32 H 1.08999 * 109.47161 * 300.00046 * 10 9 8 33 33 H 1.09007 * 109.46977 * 60.00038 * 10 9 8 34 34 H 0.97003 * 120.00248 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.91969 * 265.98320 * 19 8 7 36 36 H 1.08996 * 109.91993 * 144.68697 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6148 -0.3619 2.0754 6 6 3.5413 -0.7423 1.1310 7 6 3.9118 -2.1832 1.5633 8 7 2.8783 -3.0148 0.8949 9 6 2.7578 -4.3271 1.5441 10 6 3.9811 -5.1797 1.2018 11 6 3.8578 -6.5257 1.8682 12 1 2.9931 -6.7507 2.4749 13 6 4.8489 -7.4700 1.7034 14 7 5.9016 -7.1962 0.9642 15 14 4.6957 -9.1386 2.5289 16 1 3.4676 -9.8193 2.0453 17 1 5.8832 -9.9662 2.1967 18 1 4.6141 -8.9573 4.0005 19 6 1.6156 -2.2523 1.0026 20 1 -0.3632 0.4512 0.9233 21 1 -0.3632 0.5741 -0.8524 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0715 1.3476 -0.1724 24 1 1.5134 1.9457 -0.7911 25 1 1.7923 1.8386 0.9637 26 1 3.9196 -0.5302 0.1310 27 1 3.9188 -0.0149 1.8497 28 1 3.8487 -2.2883 2.6463 29 1 4.9075 -2.4476 1.2074 30 1 2.6984 -4.1940 2.6243 31 1 1.8562 -4.8265 1.1895 32 1 4.0405 -5.3128 0.1216 33 1 4.8828 -4.6803 1.5564 34 1 6.5987 -7.8606 0.8479 35 1 1.0608 -2.5751 1.8836 36 1 1.0138 -2.4019 0.1062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062965515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:44 Heat of formation + Delta-G solvation = -15.747196 kcal Electronic energy + Delta-G solvation = -14380.408537 eV Core-core repulsion = 12091.412762 eV Total energy + Delta-G solvation = -2288.995775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41444 -37.47565 -35.31403 -33.03241 -30.60602 -29.43056 -28.14598 -26.27789 -24.24347 -23.15475 -21.48281 -20.86131 -18.56123 -17.37435 -16.83832 -16.48562 -15.78618 -15.57650 -15.18527 -15.10042 -14.27836 -13.99293 -13.77928 -13.44973 -13.20351 -13.01503 -12.85550 -12.61155 -12.52801 -12.31446 -12.07731 -11.91389 -11.86346 -11.66927 -11.33992 -11.22971 -10.54370 -9.32809 -9.18884 -8.19290 -6.31503 1.40352 1.44123 1.52076 2.40965 2.97638 3.13753 3.17804 3.59193 3.78408 4.20580 4.28648 4.34446 4.40862 4.48271 4.50994 4.56923 4.66819 4.73604 4.78648 4.85849 4.93522 5.01172 5.05068 5.05797 5.09834 5.21149 5.45044 5.63324 5.78792 6.03699 6.11797 6.16317 6.21811 6.32765 6.85381 7.37704 8.92891 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072583 B = 0.005532 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.672256 B = 5060.394165 C = 5264.943091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.024 3.976 4 C 0.082 3.918 5 H 0.055 0.945 6 C -0.104 4.104 7 C 0.036 3.964 8 N -0.532 5.532 9 C 0.072 3.928 10 C 0.040 3.960 11 C -0.548 4.548 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.044 3.956 20 H 0.031 0.969 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.024 0.976 31 H 0.060 0.940 32 H -0.011 1.011 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.042 0.958 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.175 15.851 1.173 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.279 5.279 3 C -0.123 4.123 4 C -0.027 4.027 5 H 0.073 0.927 6 C -0.143 4.143 7 C -0.092 4.092 8 N -0.257 5.257 9 C -0.056 4.056 10 C 0.002 3.998 11 C -0.586 4.586 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.191 1.191 19 C -0.084 4.084 20 H 0.049 0.951 21 H 0.099 0.901 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.008 0.992 33 H 0.010 0.990 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.745 15.455 0.134 17.758 hybrid contribution -0.201 -0.613 1.772 1.886 sum -8.946 14.842 1.906 17.434 Atomic orbital electron populations 1.22453 0.86482 1.02488 1.01155 1.62050 1.08795 1.14693 1.42373 1.22426 1.01396 0.87664 1.00854 1.22439 0.95452 0.92849 0.91969 0.92703 1.22551 0.94009 0.95065 1.02636 1.23177 0.96400 0.93253 0.96345 1.64730 1.05671 1.02586 1.52675 1.22140 0.99301 0.89248 0.94923 1.18841 0.92608 0.93335 0.94996 1.21604 1.05993 1.00021 1.30985 0.92154 1.25986 0.94739 1.03069 0.95838 1.70112 1.10226 1.36517 1.40340 0.85460 0.77821 0.78440 0.79052 1.19126 1.20710 1.19067 1.22933 0.92176 0.92477 1.00809 0.95082 0.90081 0.91711 0.91172 0.90288 0.95074 0.90225 0.89105 0.94119 0.91815 0.95759 0.92173 0.99223 0.99017 0.92712 0.93918 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.31 127.69 1.19 1.60 16 2 N -0.55 -12.61 4.79 -918.07 -4.39 -17.01 16 3 C 0.02 0.43 9.17 127.69 1.17 1.60 16 4 C 0.08 2.07 2.72 45.80 0.12 2.19 16 5 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 6 C -0.10 -2.74 5.57 31.80 0.18 -2.57 16 7 C 0.04 1.27 5.91 86.65 0.51 1.78 16 8 N -0.53 -20.80 5.24 -883.02 -4.63 -25.43 16 9 C 0.07 3.22 4.64 86.30 0.40 3.62 16 10 C 0.04 2.22 5.06 29.85 0.15 2.37 16 11 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.00 0.10 5.46 84.66 0.46 0.56 16 14 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 15 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 C 0.04 1.37 5.88 86.45 0.51 1.87 16 20 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 21 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 22 H 0.06 1.28 6.62 -2.39 -0.02 1.27 16 23 H 0.07 1.24 6.83 -2.38 -0.02 1.23 16 24 H 0.08 1.16 8.02 -2.39 -0.02 1.14 16 25 H 0.03 0.49 8.13 -2.38 -0.02 0.47 16 26 H 0.08 2.19 7.35 -2.38 -0.02 2.17 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.39 7.81 -2.39 -0.02 1.37 16 29 H 0.06 2.46 7.80 -2.39 -0.02 2.44 16 30 H 0.02 1.06 7.83 -2.39 -0.02 1.04 16 31 H 0.06 2.65 8.08 -2.39 -0.02 2.63 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H -0.01 -0.51 7.37 -2.38 -0.02 -0.53 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.04 1.27 7.77 -2.39 -0.02 1.25 16 36 H 0.08 2.52 6.67 -2.39 -0.02 2.50 16 Total: -1.00 -66.66 283.97 -0.77 -67.43 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.02 Total: 4.95 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 4.93 Total: -18.95 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -8.74 Total: -100.42 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.66 -0.77 -67.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.687 kcal (2) G-P(sol) polarization free energy of solvation -66.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds