Wall clock time and date at job start Mon Mar 30 2020 02:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99963 * 2 1 4 4 C 1.46897 * 111.00071 * 123.95819 * 2 1 3 5 5 H 1.09000 * 110.64386 * 298.30001 * 4 2 1 6 6 C 1.54594 * 110.72492 * 61.45256 * 4 2 1 7 7 C 1.53999 * 105.13901 * 140.31254 * 6 4 2 8 8 N 1.47899 * 107.05725 * 1.22895 * 7 6 4 9 9 C 1.46909 * 110.99696 * 214.15312 * 8 7 6 10 10 C 1.53001 * 109.46837 * 175.70680 * 9 8 7 11 11 C 1.50699 * 109.46888 * 174.86035 * 10 9 8 12 12 H 1.08001 * 119.99957 * 0.28080 * 11 10 9 13 13 C 1.37878 * 120.00059 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00024 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99863 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47349 * 60.00366 * 15 13 11 17 17 H 1.48506 * 109.47140 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47325 * 299.99916 * 15 13 11 19 19 C 1.48534 * 105.81942 * 334.66203 * 8 7 6 20 20 H 1.08997 * 109.46982 * 296.04008 * 1 2 3 21 21 H 1.08996 * 109.47035 * 56.04009 * 1 2 3 22 22 H 1.08999 * 109.47015 * 176.04222 * 1 2 3 23 23 H 1.09003 * 109.47207 * 183.95470 * 3 2 1 24 24 H 1.08992 * 109.47178 * 303.95594 * 3 2 1 25 25 H 1.09001 * 109.46916 * 63.95989 * 3 2 1 26 26 H 1.09001 * 110.30745 * 21.40513 * 6 4 2 27 27 H 1.08990 * 110.39409 * 259.27275 * 6 4 2 28 28 H 1.09004 * 109.91604 * 241.86940 * 7 6 4 29 29 H 1.09006 * 110.07939 * 120.67204 * 7 6 4 30 30 H 1.08997 * 109.46938 * 55.71114 * 9 8 7 31 31 H 1.08997 * 109.46812 * 295.71006 * 9 8 7 32 32 H 1.09004 * 109.47035 * 54.86340 * 10 9 8 33 33 H 1.09000 * 109.47189 * 294.86114 * 10 9 8 34 34 H 0.96995 * 120.00201 * 180.02562 * 14 13 11 35 35 H 1.09007 * 110.66355 * 157.64408 * 19 8 7 36 36 H 1.08993 * 110.66964 * 280.77208 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.6817 -0.3183 2.0805 6 6 1.5464 -2.2432 1.0571 7 6 2.7722 -3.0610 1.5045 8 7 3.8376 -2.0940 1.8466 9 6 5.1629 -2.6284 1.5054 10 6 6.2270 -1.5621 1.7730 11 6 7.5957 -2.1497 1.5438 12 1 7.6962 -3.1793 1.2335 13 6 8.7193 -1.3715 1.7252 14 7 8.5966 -0.1165 2.0988 15 14 10.4157 -2.0997 1.4404 16 1 10.5249 -2.5652 0.0345 17 1 11.4486 -1.0649 1.7003 18 1 10.6223 -3.2478 2.3595 19 6 3.5396 -0.8687 1.0617 20 1 -0.3633 0.4511 0.9233 21 1 -0.3633 0.5740 -0.8523 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3433 -0.0709 24 1 1.5898 1.9163 -0.8523 25 1 1.7045 1.8723 0.9234 26 1 1.2732 -2.5003 0.0337 27 1 0.7068 -2.4220 1.7285 28 1 3.1041 -3.7073 0.6919 29 1 2.5220 -3.6625 2.3785 30 1 5.1827 -2.9049 0.4512 31 1 5.3681 -3.5078 2.1157 32 1 6.1468 -1.2196 2.8048 33 1 6.0754 -0.7199 1.0978 34 1 9.3870 0.4311 2.2260 35 1 4.0061 0.0040 1.5189 36 1 3.8673 -0.9844 0.0286 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062965516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:45 Heat of formation + Delta-G solvation = -18.395724 kcal Electronic energy + Delta-G solvation = -14490.778538 eV Core-core repulsion = 12201.667914 eV Total energy + Delta-G solvation = -2289.110624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41286 -37.49840 -35.36419 -33.12816 -30.14739 -29.82519 -28.14766 -26.26918 -24.63198 -22.77312 -21.45288 -20.93760 -18.57342 -17.26818 -16.93216 -16.48146 -16.08260 -15.43144 -14.94558 -14.88738 -14.66262 -14.31035 -13.73934 -13.36852 -13.24258 -13.14585 -12.85412 -12.74169 -12.45145 -12.34335 -12.04728 -11.88501 -11.82629 -11.67641 -11.32648 -11.23519 -10.56430 -9.35506 -9.32313 -8.20982 -6.33016 1.39846 1.43609 1.51491 2.40085 2.79226 3.12276 3.39567 3.59081 3.75373 4.13376 4.26199 4.33831 4.43008 4.47523 4.52494 4.56391 4.66915 4.74665 4.76692 4.88839 4.97925 4.99531 5.01081 5.02863 5.08140 5.20399 5.42587 5.58484 5.76711 5.91548 6.06162 6.10234 6.20689 6.29792 6.83221 7.36264 8.91224 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047974 B = 0.006369 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.512386 B = 4395.152235 C = 4818.981282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.023 3.977 4 C 0.085 3.915 5 H 0.051 0.949 6 C -0.109 4.109 7 C 0.033 3.967 8 N -0.534 5.534 9 C 0.072 3.928 10 C 0.036 3.964 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.055 3.945 20 H 0.028 0.972 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.085 0.915 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.021 0.979 31 H 0.066 0.934 32 H -0.008 1.008 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.054 0.946 36 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.986 -1.538 -3.738 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.126 4.126 4 C -0.025 4.025 5 H 0.069 0.931 6 C -0.147 4.147 7 C -0.095 4.095 8 N -0.258 5.258 9 C -0.056 4.056 10 C -0.001 4.001 11 C -0.586 4.586 12 H 0.079 0.921 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.190 1.190 19 C -0.073 4.073 20 H 0.047 0.953 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.071 0.929 24 H 0.104 0.896 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.731 -1.520 -3.567 16.202 hybrid contribution 1.015 0.302 -0.098 1.064 sum -14.716 -1.217 -3.665 15.214 Atomic orbital electron populations 1.22452 0.85571 1.03185 1.01091 1.62063 1.09428 1.14152 1.42097 1.22402 1.00390 0.88557 1.01204 1.22488 0.92995 0.95123 0.91853 0.93117 1.22400 0.97407 0.92186 1.02730 1.22949 0.91332 0.95020 1.00224 1.64761 1.02497 1.05174 1.53371 1.22152 0.88152 0.98146 0.97163 1.18910 0.92676 0.93618 0.94897 1.21596 0.92410 0.98118 1.46444 0.92088 1.25986 1.03902 0.95149 0.94593 1.70103 1.30971 1.08229 1.47932 0.85455 0.77997 0.78158 0.79145 1.19134 1.20698 1.19016 1.22994 0.95273 0.93547 0.95504 0.95332 0.90165 0.90316 0.92943 0.89596 0.95290 0.89811 0.89051 0.93858 0.89437 0.96070 0.91538 0.98982 0.99128 0.92701 0.92795 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.34 127.69 1.19 1.64 16 2 N -0.55 -13.91 4.85 -916.16 -4.45 -18.36 16 3 C 0.02 0.55 9.35 127.69 1.19 1.75 16 4 C 0.08 2.40 2.75 46.12 0.13 2.53 16 5 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.11 -2.62 5.49 31.47 0.17 -2.45 16 7 C 0.03 0.96 6.70 86.45 0.58 1.54 16 8 N -0.53 -20.69 5.35 -882.97 -4.73 -25.42 16 9 C 0.07 3.23 4.78 86.30 0.41 3.64 16 10 C 0.04 2.03 4.65 29.85 0.14 2.17 16 11 C -0.55 -32.21 9.11 25.60 0.23 -31.97 16 12 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 13 C 0.00 0.10 5.46 84.66 0.46 0.56 16 14 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 15 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 19 C 0.06 2.06 3.75 86.65 0.32 2.39 16 20 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 21 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 22 H 0.08 1.27 6.98 -2.39 -0.02 1.25 16 23 H 0.05 1.50 7.08 -2.39 -0.02 1.48 16 24 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 25 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.89 7.70 -2.39 -0.02 1.87 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.27 7.67 -2.39 -0.02 1.25 16 29 H 0.09 2.31 8.14 -2.38 -0.02 2.30 16 30 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 31 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 32 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 33 H -0.01 -0.58 7.18 -2.39 -0.02 -0.59 16 34 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.05 2.25 7.62 -2.38 -0.02 2.24 16 36 H 0.04 1.44 8.01 -2.39 -0.02 1.42 16 Total: -1.00 -66.30 285.23 -1.01 -67.32 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.01 Total: 5.51 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.84 Total: -18.21 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -8.89 Total: -101.63 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.30 -1.01 -67.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062965516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.922 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds