Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99750 * 2 1 4 4 C 1.53003 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.53112 * 109.52298 * 175.00056 * 4 3 2 6 6 C 1.53031 * 109.28065 * 177.62478 * 5 4 3 7 7 N 1.46850 * 109.52191 * 300.81936 * 6 5 4 8 8 C 1.46904 * 111.00104 * 185.83867 * 7 6 5 9 9 C 1.50697 * 109.46891 * 170.00174 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72239 * 9 8 7 11 11 C 1.37885 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48490 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 120.00108 * 13 11 9 16 16 H 1.48504 * 109.46636 * 239.99667 * 13 11 9 17 17 C 1.46846 * 111.19767 * 61.74317 * 7 6 5 18 18 C 1.53043 * 109.52316 * 298.25581 * 17 7 6 19 19 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47779 * 300.00471 * 1 2 3 21 21 H 1.09000 * 109.47037 * 60.00243 * 1 2 3 22 22 H 1.00892 * 111.00099 * 236.04444 * 2 1 3 23 23 H 1.09007 * 109.46889 * 59.99637 * 3 2 1 24 24 H 1.08992 * 109.46787 * 299.99596 * 3 2 1 25 25 H 1.09000 * 109.52023 * 54.87101 * 4 3 2 26 26 H 1.09007 * 109.50366 * 57.67930 * 5 4 3 27 27 H 1.09001 * 109.50045 * 297.56601 * 5 4 3 28 28 H 1.08997 * 109.46601 * 180.80276 * 6 5 4 29 29 H 1.09006 * 109.45698 * 60.82720 * 6 5 4 30 30 H 1.08998 * 109.47046 * 49.99675 * 8 7 6 31 31 H 1.09001 * 109.47014 * 289.99875 * 8 7 6 32 32 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.46465 * 58.27194 * 17 7 6 34 34 H 1.08998 * 109.46421 * 178.24606 * 17 7 6 35 35 H 1.08999 * 109.50530 * 299.24210 * 18 17 7 36 36 H 1.08996 * 109.50505 * 179.12322 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3307 0.0006 5 6 4.0748 2.7541 -0.1251 6 6 5.6033 2.7126 -0.0643 7 7 6.0277 2.1154 1.2084 8 6 7.4871 2.1851 1.3619 9 6 7.8635 1.7934 2.7676 10 1 7.0953 1.5244 3.4773 11 6 9.1884 1.7846 3.1493 12 7 10.1239 2.1127 2.2852 13 14 9.6544 1.3065 4.8939 14 1 8.4263 0.9839 5.6637 15 1 10.5446 0.1184 4.8606 16 1 10.3630 2.4378 5.5446 17 6 5.5513 0.7317 1.3307 18 6 4.0211 0.7142 1.3115 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8306 -0.5261 -0.7813 23 1 1.6458 1.8948 0.8900 24 1 1.6460 1.8947 -0.8900 25 1 3.8736 0.7299 -0.8393 26 1 3.6944 3.3649 0.6938 27 1 3.7599 3.1831 -1.0764 28 1 5.9975 3.7260 -0.1393 29 1 5.9834 2.1129 -0.8915 30 1 7.8249 3.2026 1.1653 31 1 7.9597 1.5025 0.6556 32 1 11.0560 2.1061 2.5537 33 1 5.9317 0.1416 0.4970 34 1 5.9075 0.3065 2.2690 35 1 3.6399 1.2928 2.1529 36 1 3.6679 -0.3142 1.3867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063166223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -12.259553 kcal Electronic energy + Delta-G solvation = -14450.714777 eV Core-core repulsion = 12161.870237 eV Total energy + Delta-G solvation = -2288.844540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.61278 -36.08100 -33.40865 -31.91423 -30.20284 -27.99048 -25.96165 -23.86512 -22.60717 -21.89103 -20.65258 -19.13616 -16.22949 -15.96347 -15.06316 -14.74843 -14.46681 -14.10574 -14.02807 -13.39769 -13.16940 -12.67461 -12.14262 -11.99056 -11.95091 -11.70346 -11.50853 -11.05866 -10.72889 -10.63889 -10.51787 -10.23291 -10.03933 -9.82554 -9.51383 -9.07112 -8.49471 -8.38899 -7.11773 -5.98039 -3.98813 3.34378 3.41540 3.47145 4.18272 4.47179 4.91038 5.08746 5.13891 5.24938 5.31464 5.37205 5.38250 5.65955 5.72536 5.79294 5.80295 5.93060 6.03598 6.15003 6.34446 6.36698 6.49868 6.52979 6.65262 6.85871 6.89777 6.96916 7.27577 7.39374 7.43719 7.87578 8.17829 8.31516 8.64505 9.09852 9.65335 11.13027 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052706 B = 0.006241 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.119626 B = 4485.655620 C = 4858.194311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.064 3.936 4 C -0.085 4.085 5 C -0.108 4.108 6 C 0.057 3.943 7 N -0.537 5.537 8 C 0.192 3.808 9 C -0.504 4.504 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.063 3.937 18 C -0.100 4.100 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.017 0.983 22 H 0.339 0.661 23 H 0.072 0.928 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.028 0.972 31 H -0.011 1.011 32 H 0.260 0.740 33 H 0.015 0.985 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -2.241 -5.777 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.323 5.323 3 C -0.065 4.065 4 C -0.104 4.104 5 C -0.146 4.146 6 C -0.072 4.072 7 N -0.262 5.262 8 C 0.067 3.933 9 C -0.543 4.543 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.065 4.065 18 C -0.138 4.138 19 H 0.083 0.917 20 H 0.082 0.918 21 H 0.036 0.964 22 H 0.157 0.843 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.007 0.993 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.175 -2.013 -4.722 16.019 hybrid contribution 0.608 -0.381 -0.753 1.040 sum -14.567 -2.394 -5.476 15.745 Atomic orbital electron populations 1.22173 0.88256 1.01556 1.00158 1.60371 1.07224 1.14809 1.49896 1.22081 0.95353 0.88880 1.00139 1.21206 0.93006 0.97028 0.99148 1.21590 0.96164 0.96000 1.00864 1.21967 0.94133 0.99462 0.91650 1.62034 1.16378 1.17480 1.30300 1.19709 0.80241 0.96656 0.96722 1.21228 0.91857 1.44616 0.96565 0.91782 1.24999 0.96495 0.95650 0.97567 1.69977 1.00339 1.49230 1.34476 0.86453 0.78450 0.77991 0.84619 1.19624 1.21152 1.21059 1.21972 0.93534 0.89955 1.01045 1.21556 0.95561 1.00465 0.96230 0.91671 0.91795 0.96443 0.84344 0.90947 0.95750 0.92101 0.91313 0.92783 0.91570 0.96377 0.95344 0.99308 0.93061 0.96684 0.90029 0.91856 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.90 16 2 N -0.69 -7.72 6.38 -121.13 -0.77 -8.49 16 3 C 0.06 0.77 5.08 -3.82 -0.02 0.75 16 4 C -0.08 -1.20 2.39 -90.50 -0.22 -1.41 16 5 C -0.11 -1.61 5.38 -26.66 -0.14 -1.75 16 6 C 0.06 1.06 5.46 -3.84 -0.02 1.04 16 7 N -0.54 -12.01 4.65 -236.11 -1.10 -13.11 16 8 C 0.19 5.17 4.72 -4.98 -0.02 5.14 16 9 C -0.50 -14.49 8.42 -34.44 -0.29 -14.78 16 10 H 0.06 1.83 7.13 -52.49 -0.37 1.45 16 11 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 13 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.06 1.29 5.30 -3.83 -0.02 1.27 16 18 C -0.10 -1.64 5.24 -26.65 -0.14 -1.78 16 19 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 22 H 0.34 3.44 8.82 -39.30 -0.35 3.09 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.81 7.99 -51.93 -0.41 0.40 16 31 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.81 6.70 -51.93 -0.35 1.46 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 LS Contribution 285.81 15.07 4.31 4.31 Total: -1.00 -30.18 285.81 -8.69 -38.87 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -6.51 Total: -2.87 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.33 Total: -9.17 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -1.13 Total: -48.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.18 -8.69 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063166223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.615 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds