Wall clock time and date at job start Mon Mar 30 2020 02:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99750 * 2 1 4 4 C 1.53003 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.53112 * 109.52298 * 175.00056 * 4 3 2 6 6 C 1.53031 * 109.28065 * 177.62478 * 5 4 3 7 7 N 1.46850 * 109.52191 * 300.81936 * 6 5 4 8 8 C 1.46904 * 111.00104 * 185.83867 * 7 6 5 9 9 C 1.50697 * 109.46891 * 170.00174 * 8 7 6 10 10 H 1.07991 * 120.00449 * 359.72239 * 9 8 7 11 11 C 1.37885 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48490 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 120.00108 * 13 11 9 16 16 H 1.48504 * 109.46636 * 239.99667 * 13 11 9 17 17 C 1.46846 * 111.19767 * 61.74317 * 7 6 5 18 18 C 1.53043 * 109.52316 * 298.25581 * 17 7 6 19 19 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47779 * 300.00471 * 1 2 3 21 21 H 1.09000 * 109.47037 * 60.00243 * 1 2 3 22 22 H 1.00892 * 111.00099 * 236.04444 * 2 1 3 23 23 H 1.09007 * 109.46889 * 59.99637 * 3 2 1 24 24 H 1.08992 * 109.46787 * 299.99596 * 3 2 1 25 25 H 1.09000 * 109.52023 * 54.87101 * 4 3 2 26 26 H 1.09007 * 109.50366 * 57.67930 * 5 4 3 27 27 H 1.09001 * 109.50045 * 297.56601 * 5 4 3 28 28 H 1.08997 * 109.46601 * 180.80276 * 6 5 4 29 29 H 1.09006 * 109.45698 * 60.82720 * 6 5 4 30 30 H 1.08998 * 109.47046 * 49.99675 * 8 7 6 31 31 H 1.09001 * 109.47014 * 289.99875 * 8 7 6 32 32 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 33 33 H 1.08996 * 109.46465 * 58.27194 * 17 7 6 34 34 H 1.08998 * 109.46421 * 178.24606 * 17 7 6 35 35 H 1.08999 * 109.50530 * 299.24210 * 18 17 7 36 36 H 1.08996 * 109.50505 * 179.12322 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3307 0.0006 5 6 4.0748 2.7541 -0.1251 6 6 5.6033 2.7126 -0.0643 7 7 6.0277 2.1154 1.2084 8 6 7.4871 2.1851 1.3619 9 6 7.8635 1.7934 2.7676 10 1 7.0953 1.5244 3.4773 11 6 9.1884 1.7846 3.1493 12 7 10.1239 2.1127 2.2852 13 14 9.6544 1.3065 4.8939 14 1 8.4263 0.9839 5.6637 15 1 10.5446 0.1184 4.8606 16 1 10.3630 2.4378 5.5446 17 6 5.5513 0.7317 1.3307 18 6 4.0211 0.7142 1.3115 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8306 -0.5261 -0.7813 23 1 1.6458 1.8948 0.8900 24 1 1.6460 1.8947 -0.8900 25 1 3.8736 0.7299 -0.8393 26 1 3.6944 3.3649 0.6938 27 1 3.7599 3.1831 -1.0764 28 1 5.9975 3.7260 -0.1393 29 1 5.9834 2.1129 -0.8915 30 1 7.8249 3.2026 1.1653 31 1 7.9597 1.5025 0.6556 32 1 11.0560 2.1061 2.5537 33 1 5.9317 0.1416 0.4970 34 1 5.9075 0.3065 2.2690 35 1 3.6399 1.2928 2.1529 36 1 3.6679 -0.3142 1.3867 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063166223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:44 Heat of formation + Delta-G solvation = -33.879925 kcal Electronic energy + Delta-G solvation = -14451.652307 eV Core-core repulsion = 12161.870237 eV Total energy + Delta-G solvation = -2289.782069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04155 -37.26241 -35.18215 -33.65476 -31.67168 -29.61934 -27.49592 -25.12594 -24.15204 -23.38528 -22.14454 -20.54034 -18.45995 -17.14539 -16.62468 -15.98743 -15.79936 -15.67950 -15.31122 -15.10423 -14.28792 -14.18973 -13.71951 -13.68076 -13.31578 -12.94769 -12.81234 -12.56631 -12.51403 -12.35708 -12.07417 -11.96966 -11.59593 -11.39168 -11.08685 -10.92327 -10.62014 -9.30489 -8.98045 -8.21064 -6.31359 1.40692 1.41301 1.55555 2.40509 3.11020 3.33665 3.35109 3.89153 3.96507 4.08090 4.40388 4.47474 4.52550 4.54435 4.65235 4.69028 4.74574 4.82552 4.92540 5.00023 5.05665 5.07976 5.11579 5.22346 5.24443 5.37007 5.40730 5.57417 5.66563 6.06437 6.10873 6.38713 6.51223 6.69641 6.85740 7.38617 8.90515 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052706 B = 0.006241 C = 0.005762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.119626 B = 4485.655620 C = 4858.194311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.707 5.707 3 C 0.075 3.925 4 C -0.079 4.079 5 C -0.098 4.098 6 C 0.052 3.948 7 N -0.544 5.544 8 C 0.206 3.794 9 C -0.523 4.523 10 H 0.062 0.938 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.971 3.029 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.065 3.935 18 C -0.087 4.087 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.027 0.973 22 H 0.345 0.655 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.003 0.997 31 H -0.042 1.042 32 H 0.265 0.735 33 H 0.008 0.992 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 -2.608 -5.549 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.338 5.338 3 C -0.054 4.054 4 C -0.098 4.098 5 C -0.136 4.136 6 C -0.077 4.077 7 N -0.269 5.269 8 C 0.080 3.920 9 C -0.561 4.561 10 H 0.080 0.920 11 C -0.197 4.197 12 N -0.577 5.577 13 Si 0.796 3.204 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.064 4.064 18 C -0.125 4.125 19 H 0.094 0.906 20 H 0.080 0.920 21 H 0.045 0.955 22 H 0.163 0.837 23 H 0.087 0.913 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.021 0.979 31 H -0.025 1.025 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.001 -2.383 -4.508 17.750 hybrid contribution 1.170 -0.269 -0.881 1.489 sum -15.831 -2.651 -5.389 16.932 Atomic orbital electron populations 1.22200 0.86925 1.02423 1.00483 1.60345 1.08567 1.14348 1.50519 1.21900 0.93156 0.89653 1.00738 1.21141 0.94893 0.96135 0.97643 1.21537 0.92664 0.96887 1.02552 1.22115 0.97201 0.98665 0.89681 1.61986 1.13216 1.18933 1.32798 1.19376 0.83157 0.94073 0.95443 1.21497 0.92304 1.45027 0.97265 0.92012 1.25947 0.96302 0.95249 1.02242 1.70101 1.00865 1.49920 1.36797 0.85301 0.78331 0.77912 0.78885 1.18751 1.20280 1.20230 1.21981 0.96472 0.88526 0.99385 1.21434 0.92022 1.01426 0.97582 0.90619 0.92022 0.95486 0.83688 0.91322 0.94138 0.91737 0.91424 0.89645 0.92075 0.96649 0.97932 1.02452 0.92656 0.97355 0.92570 0.92495 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 127.69 1.37 1.81 16 2 N -0.71 -13.71 6.38 -537.14 -3.43 -17.14 16 3 C 0.07 1.55 5.08 86.30 0.44 1.98 16 4 C -0.08 -2.05 2.39 -10.71 -0.03 -2.07 16 5 C -0.10 -2.72 5.38 30.64 0.16 -2.56 16 6 C 0.05 1.93 5.46 86.32 0.47 2.40 16 7 N -0.54 -24.91 4.65 -900.92 -4.19 -29.10 16 8 C 0.21 11.58 4.72 85.56 0.40 11.98 16 9 C -0.52 -30.83 8.42 25.60 0.22 -30.62 16 10 H 0.06 3.59 7.13 -2.92 -0.02 3.57 16 11 C 0.00 0.02 5.46 84.66 0.46 0.48 16 12 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 13 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 14 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.06 2.66 5.30 86.33 0.46 3.12 16 18 C -0.09 -2.74 5.24 30.65 0.16 -2.58 16 19 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.03 0.36 8.14 -2.39 -0.02 0.35 16 22 H 0.35 6.00 8.82 -89.70 -0.79 5.21 16 23 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.31 8.02 -2.39 -0.02 2.29 16 29 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.00 0.16 7.99 -2.39 -0.02 0.14 16 31 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 32 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 2.56 6.70 -2.39 -0.02 2.55 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 2.30 7.84 -2.39 -0.02 2.29 16 Total: -1.00 -65.72 285.81 -0.95 -66.68 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.23 Total: 5.75 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.11 Total: -16.06 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -7.33 Total: -103.78 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -65.72 -0.95 -66.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063166223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.799 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds