Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00464 * 2 1 4 4 C 1.52997 * 109.47414 * 185.41235 * 3 2 1 5 5 H 1.08999 * 109.45081 * 173.80424 * 4 3 2 6 6 C 1.53040 * 109.46205 * 293.78100 * 4 3 2 7 7 C 1.53120 * 109.27224 * 179.19354 * 6 4 3 8 8 C 1.53112 * 109.16417 * 302.34105 * 7 6 4 9 9 C 1.53036 * 109.27604 * 57.65826 * 8 7 6 10 10 N 1.46838 * 109.52616 * 300.81960 * 9 8 7 11 11 C 1.46908 * 111.00407 * 185.83850 * 10 9 8 12 12 C 1.50699 * 109.47012 * 67.46232 * 11 10 9 13 13 H 1.07999 * 119.99643 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99539 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47392 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47129 * 299.99929 * 16 14 12 19 19 H 1.48496 * 109.47342 * 59.99525 * 16 14 12 20 20 H 1.08998 * 109.47237 * 59.99593 * 1 2 3 21 21 H 1.09002 * 109.47784 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47270 * 299.99972 * 1 2 3 23 23 H 1.00900 * 110.99656 * 123.95412 * 2 1 3 24 24 H 1.09007 * 109.47207 * 65.41238 * 3 2 1 25 25 H 1.09003 * 109.47327 * 305.41870 * 3 2 1 26 26 H 1.08998 * 109.50414 * 59.25511 * 6 4 3 27 27 H 1.08993 * 109.53241 * 299.15385 * 6 4 3 28 28 H 1.09003 * 109.51605 * 182.44237 * 7 6 4 29 29 H 1.08996 * 109.52552 * 62.25299 * 7 6 4 30 30 H 1.08995 * 109.50703 * 297.72094 * 8 7 6 31 31 H 1.08999 * 109.54145 * 177.61915 * 8 7 6 32 32 H 1.09005 * 109.46228 * 180.80469 * 9 8 7 33 33 H 1.09008 * 109.45378 * 60.83272 * 9 8 7 34 34 H 1.09000 * 109.46661 * 307.46159 * 11 10 9 35 35 H 1.08999 * 109.47244 * 187.46188 * 11 10 9 36 36 H 0.96995 * 120.00794 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5189 1.3328 -0.1361 5 1 3.8993 2.3482 -0.2466 6 6 4.1266 0.6939 1.1149 7 6 5.6495 0.6392 0.9654 8 6 6.0025 -0.1488 -0.2990 9 6 5.3404 0.5144 -1.5089 10 7 3.8847 0.5418 -1.3181 11 6 3.2056 1.0456 -2.5194 12 6 3.3709 0.0547 -3.6427 13 1 3.9254 -0.8577 -3.4805 14 6 2.8152 0.3136 -4.8777 15 7 2.1405 1.4250 -5.0751 16 14 3.0195 -0.9150 -6.2698 17 1 2.3342 -0.4051 -7.4846 18 1 4.4645 -1.1004 -6.5583 19 1 2.4231 -2.2159 -5.8735 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8305 -0.5261 0.7814 24 1 1.7266 1.8638 0.9345 25 1 1.5698 1.9240 -0.8375 26 1 3.7360 -0.3167 1.2337 27 1 3.8679 1.2893 1.9904 28 1 6.0832 0.1456 1.8352 29 1 6.0443 1.6520 0.8856 30 1 5.6414 -1.1726 -0.2025 31 1 7.0840 -0.1556 -0.4343 32 1 5.5781 -0.0525 -2.4091 33 1 5.7124 1.5338 -1.6129 34 1 3.6428 2.0009 -2.8102 35 1 2.1450 1.1809 -2.3074 36 1 2.0340 2.0628 -4.3522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063169256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = -4.398621 kcal Electronic energy + Delta-G solvation = -15122.653633 eV Core-core repulsion = 12834.149969 eV Total energy + Delta-G solvation = -2288.503664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.78935 -35.23406 -33.73258 -31.74783 -30.76176 -26.76375 -25.86712 -23.58776 -23.48087 -21.46285 -20.59594 -18.78935 -16.61903 -15.86788 -14.89276 -14.73550 -14.18606 -13.66587 -13.60970 -13.49189 -12.98728 -12.76878 -12.45391 -11.70258 -11.52803 -11.46747 -11.33299 -11.08062 -10.73138 -10.58731 -10.50081 -10.28091 -10.00980 -9.87460 -9.41162 -8.49796 -8.20572 -7.82711 -7.05275 -6.22005 -3.87538 3.51661 3.55058 3.72809 4.58866 4.68634 4.93310 5.16273 5.20518 5.32453 5.52856 5.58687 5.66180 5.75153 5.80039 5.88613 5.89525 6.03363 6.08951 6.25647 6.26275 6.28200 6.37427 6.43627 6.55536 6.78702 6.81530 7.19772 7.30748 7.48576 7.85480 8.05267 8.25696 8.52992 8.77196 9.04391 9.81275 11.17034 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.010812 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.804038 B = 2589.071976 C = 3269.160299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.662 5.662 3 C 0.069 3.931 4 C 0.084 3.916 5 H 0.027 0.973 6 C -0.110 4.110 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.063 3.937 10 N -0.502 5.502 11 C 0.185 3.815 12 C -0.573 4.573 13 H 0.054 0.946 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 1.070 2.930 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.288 1.288 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.007 0.993 23 H 0.334 0.666 24 H 0.019 0.981 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.012 0.988 34 H -0.032 1.032 35 H 0.034 0.966 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 -1.262 12.093 12.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.293 5.293 3 C -0.061 4.061 4 C -0.026 4.026 5 H 0.044 0.956 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.065 4.065 10 N -0.227 5.227 11 C 0.060 3.940 12 C -0.612 4.612 13 H 0.072 0.928 14 C -0.192 4.192 15 N -0.558 5.558 16 Si 0.899 3.101 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.215 1.215 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.026 0.974 23 H 0.152 0.848 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.030 0.970 34 H -0.015 1.015 35 H 0.051 0.949 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.027 -2.097 9.884 10.306 hybrid contribution 0.439 1.493 2.407 2.866 sum 2.466 -0.604 12.291 12.551 Atomic orbital electron populations 1.22164 0.88794 1.01306 0.99544 1.60094 1.06090 1.13553 1.49529 1.22022 0.94871 0.90155 0.99018 1.21588 0.93775 0.94507 0.92696 0.95558 1.21608 0.95471 1.01350 0.96408 1.21532 0.96044 0.99895 0.97939 1.21608 0.98819 1.00168 0.94790 1.21966 0.88911 0.97819 0.97835 1.61869 1.05528 1.52055 1.03263 1.19832 0.94108 0.93278 0.86772 1.21951 1.36774 1.06274 0.96158 0.92760 1.25761 0.93998 0.99585 0.99848 1.70787 1.39568 1.09580 1.35891 0.83522 0.76002 0.74930 0.75617 1.21066 1.21695 1.21476 0.91799 0.91866 0.97420 0.84809 0.96348 0.90746 0.91124 0.92959 0.92685 0.92911 0.91401 0.92689 0.89944 0.97011 1.01473 0.94864 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.69 60.06 0.64 1.13 16 2 N -0.66 -11.61 6.48 -121.13 -0.79 -12.40 16 3 C 0.07 1.21 4.62 -3.83 -0.02 1.20 16 4 C 0.08 1.54 2.21 -67.72 -0.15 1.39 16 5 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 6 C -0.11 -1.64 5.18 -26.65 -0.14 -1.78 16 7 C -0.12 -1.65 6.00 -26.61 -0.16 -1.81 16 8 C -0.12 -1.86 6.09 -26.65 -0.16 -2.03 16 9 C 0.06 1.29 5.30 -3.84 -0.02 1.27 16 10 N -0.50 -11.05 4.17 -228.12 -0.95 -12.00 16 11 C 0.19 4.92 3.78 -4.97 -0.02 4.90 16 12 C -0.57 -16.69 8.44 -34.44 -0.29 -16.98 16 13 H 0.05 1.60 7.24 -52.49 -0.38 1.22 16 14 C 0.01 0.31 5.46 -17.82 -0.10 0.21 16 15 N -0.92 -28.75 13.65 55.43 0.76 -27.99 16 16 Si 1.07 26.18 29.90 -169.99 -5.08 21.09 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 23 H 0.33 5.20 7.30 -39.29 -0.29 4.92 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 1.48 6.44 -51.93 -0.33 1.15 16 26 H 0.07 1.06 6.81 -51.93 -0.35 0.71 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.85 6.82 -51.93 -0.35 1.49 16 33 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 34 H -0.03 -0.92 7.97 -51.93 -0.41 -1.33 16 35 H 0.03 0.93 5.56 -51.93 -0.29 0.64 16 36 H 0.26 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 278.21 15.07 4.19 4.19 Total: -1.00 -31.34 278.21 -8.43 -39.77 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.15 Total: -0.15 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.41 Total: -12.51 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.98 Total: -52.40 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.34 -8.43 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063169256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.372 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds