Wall clock time and date at job start Mon Mar 30 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00464 * 2 1 4 4 C 1.52997 * 109.47414 * 185.41235 * 3 2 1 5 5 H 1.08999 * 109.45081 * 173.80424 * 4 3 2 6 6 C 1.53040 * 109.46205 * 293.78100 * 4 3 2 7 7 C 1.53120 * 109.27224 * 179.19354 * 6 4 3 8 8 C 1.53112 * 109.16417 * 302.34105 * 7 6 4 9 9 C 1.53036 * 109.27604 * 57.65826 * 8 7 6 10 10 N 1.46838 * 109.52616 * 300.81960 * 9 8 7 11 11 C 1.46908 * 111.00407 * 185.83850 * 10 9 8 12 12 C 1.50699 * 109.47012 * 67.46232 * 11 10 9 13 13 H 1.07999 * 119.99643 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99999 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99539 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47392 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47129 * 299.99929 * 16 14 12 19 19 H 1.48496 * 109.47342 * 59.99525 * 16 14 12 20 20 H 1.08998 * 109.47237 * 59.99593 * 1 2 3 21 21 H 1.09002 * 109.47784 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47270 * 299.99972 * 1 2 3 23 23 H 1.00900 * 110.99656 * 123.95412 * 2 1 3 24 24 H 1.09007 * 109.47207 * 65.41238 * 3 2 1 25 25 H 1.09003 * 109.47327 * 305.41870 * 3 2 1 26 26 H 1.08998 * 109.50414 * 59.25511 * 6 4 3 27 27 H 1.08993 * 109.53241 * 299.15385 * 6 4 3 28 28 H 1.09003 * 109.51605 * 182.44237 * 7 6 4 29 29 H 1.08996 * 109.52552 * 62.25299 * 7 6 4 30 30 H 1.08995 * 109.50703 * 297.72094 * 8 7 6 31 31 H 1.08999 * 109.54145 * 177.61915 * 8 7 6 32 32 H 1.09005 * 109.46228 * 180.80469 * 9 8 7 33 33 H 1.09008 * 109.45378 * 60.83272 * 9 8 7 34 34 H 1.09000 * 109.46661 * 307.46159 * 11 10 9 35 35 H 1.08999 * 109.47244 * 187.46188 * 11 10 9 36 36 H 0.96995 * 120.00794 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5189 1.3328 -0.1361 5 1 3.8993 2.3482 -0.2466 6 6 4.1266 0.6939 1.1149 7 6 5.6495 0.6392 0.9654 8 6 6.0025 -0.1488 -0.2990 9 6 5.3404 0.5144 -1.5089 10 7 3.8847 0.5418 -1.3181 11 6 3.2056 1.0456 -2.5194 12 6 3.3709 0.0547 -3.6427 13 1 3.9254 -0.8577 -3.4805 14 6 2.8152 0.3136 -4.8777 15 7 2.1405 1.4250 -5.0751 16 14 3.0195 -0.9150 -6.2698 17 1 2.3342 -0.4051 -7.4846 18 1 4.4645 -1.1004 -6.5583 19 1 2.4231 -2.2159 -5.8735 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8305 -0.5261 0.7814 24 1 1.7266 1.8638 0.9345 25 1 1.5698 1.9240 -0.8375 26 1 3.7360 -0.3167 1.2337 27 1 3.8679 1.2893 1.9904 28 1 6.0832 0.1456 1.8352 29 1 6.0443 1.6520 0.8856 30 1 5.6414 -1.1726 -0.2025 31 1 7.0840 -0.1556 -0.4343 32 1 5.5781 -0.0525 -2.4091 33 1 5.7124 1.5338 -1.6129 34 1 3.6428 2.0009 -2.8102 35 1 2.1450 1.1809 -2.3074 36 1 2.0340 2.0628 -4.3522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063169256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:03 Heat of formation + Delta-G solvation = -27.220500 kcal Electronic energy + Delta-G solvation = -15123.643264 eV Core-core repulsion = 12834.149969 eV Total energy + Delta-G solvation = -2289.493295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31507 -36.62210 -35.69940 -33.57643 -32.18360 -28.54810 -27.48249 -25.42796 -24.86536 -23.26762 -22.02460 -20.25019 -18.82865 -17.35286 -16.39725 -16.26967 -15.61333 -15.53447 -15.25668 -14.98519 -14.45610 -14.31416 -13.89355 -13.47038 -13.24604 -12.90013 -12.82089 -12.69938 -12.60522 -12.39659 -11.93332 -11.90456 -11.55727 -11.33582 -10.94759 -10.64001 -10.47031 -9.14364 -8.90176 -8.60177 -6.28501 1.52607 1.62244 1.81175 2.58916 3.15451 3.21869 3.50031 3.84671 3.90529 4.04026 4.24381 4.37653 4.42430 4.43098 4.53266 4.63087 4.65210 4.75644 4.83976 4.95347 5.01257 5.01811 5.06440 5.14390 5.21063 5.25834 5.35930 5.52240 5.91476 6.11559 6.13937 6.51877 6.57663 6.65885 6.82562 7.50355 8.77062 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026564 B = 0.010812 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.804038 B = 2589.071976 C = 3269.160299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.686 5.686 3 C 0.075 3.925 4 C 0.078 3.922 5 H 0.016 0.984 6 C -0.102 4.102 7 C -0.113 4.113 8 C -0.107 4.107 9 C 0.060 3.940 10 N -0.506 5.506 11 C 0.201 3.799 12 C -0.583 4.583 13 H 0.049 0.951 14 C -0.042 4.042 15 N -0.942 5.942 16 Si 1.119 2.881 17 H -0.284 1.284 18 H -0.270 1.270 19 H -0.271 1.271 20 H 0.037 0.963 21 H 0.075 0.925 22 H 0.034 0.966 23 H 0.347 0.653 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.001 0.999 34 H -0.067 1.067 35 H 0.017 0.983 36 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -2.575 13.981 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.319 5.319 3 C -0.055 4.055 4 C -0.032 4.032 5 H 0.033 0.967 6 C -0.140 4.140 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.068 4.068 10 N -0.231 5.231 11 C 0.074 3.926 12 C -0.622 4.622 13 H 0.067 0.933 14 C -0.238 4.238 15 N -0.581 5.581 16 Si 0.941 3.059 17 H -0.210 1.210 18 H -0.196 1.196 19 H -0.197 1.197 20 H 0.056 0.944 21 H 0.094 0.906 22 H 0.052 0.948 23 H 0.167 0.833 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.020 0.980 34 H -0.050 1.050 35 H 0.035 0.965 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.836 -3.411 11.820 12.625 hybrid contribution 0.192 1.941 1.865 2.698 sum 3.028 -1.470 13.685 14.093 Atomic orbital electron populations 1.22121 0.87661 1.02134 0.99488 1.60007 1.07470 1.13643 1.50757 1.21890 0.94190 0.90402 0.99025 1.21798 0.94695 0.93902 0.92768 0.96652 1.21585 0.95793 1.01563 0.95036 1.21547 0.95550 1.00072 0.97894 1.21550 0.99645 0.99686 0.93562 1.22015 0.88302 0.97291 0.99222 1.61824 1.06231 1.52430 1.02570 1.19483 0.93405 0.91209 0.88461 1.22259 1.36277 1.06364 0.97280 0.93308 1.27342 0.93070 1.00461 1.02922 1.70922 1.41307 1.10464 1.35418 0.82908 0.77206 0.73226 0.72589 1.20972 1.19567 1.19652 0.94411 0.90594 0.94764 0.83298 0.93109 0.94408 0.90845 0.89916 0.89272 0.92672 0.91614 0.90433 0.92931 0.98037 1.04973 0.96535 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.06 10.69 127.69 1.37 2.42 16 2 N -0.69 -23.45 6.48 -537.15 -3.48 -26.94 16 3 C 0.07 2.60 4.62 86.30 0.40 3.00 16 4 C 0.08 2.80 2.21 44.94 0.10 2.89 16 5 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 6 C -0.10 -2.69 5.18 30.65 0.16 -2.54 16 7 C -0.11 -2.78 6.00 30.67 0.18 -2.60 16 8 C -0.11 -3.19 6.09 30.64 0.19 -3.00 16 9 C 0.06 2.47 5.30 86.33 0.46 2.93 16 10 N -0.51 -22.63 4.17 -875.62 -3.65 -26.27 16 11 C 0.20 11.18 3.78 85.56 0.32 11.50 16 12 C -0.58 -35.03 8.44 25.60 0.22 -34.82 16 13 H 0.05 2.93 7.24 -2.91 -0.02 2.91 16 14 C -0.04 -2.53 5.46 84.66 0.46 -2.06 16 15 N -0.94 -60.76 13.65 21.45 0.29 -60.47 16 16 Si 1.12 52.83 29.90 68.60 2.05 54.88 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 23 H 0.35 10.05 7.30 -89.69 -0.65 9.40 16 24 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.04 1.57 6.44 -2.39 -0.02 1.56 16 26 H 0.07 1.94 6.81 -2.39 -0.02 1.92 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 2.43 6.82 -2.38 -0.02 2.41 16 33 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 34 H -0.07 -4.10 7.97 -2.39 -0.02 -4.12 16 35 H 0.02 0.98 5.56 -2.39 -0.01 0.97 16 36 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 Total: -1.00 -70.04 278.21 -0.46 -70.50 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.48 Total: 10.59 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.85 Total: -22.28 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -6.84 Total: -113.68 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.05 Total: 54.88 kcal Total: -70.04 -0.46 -70.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063169256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.276 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds