Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99924 * 2 1 4 4 C 1.53006 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47217 * 182.97503 * 4 3 2 6 6 H 1.08999 * 109.69937 * 51.64487 * 5 4 3 7 7 C 1.53188 * 109.58733 * 171.99895 * 5 4 3 8 8 C 1.53039 * 109.31116 * 174.42121 * 7 5 4 9 9 C 1.53042 * 109.53788 * 298.63573 * 8 7 5 10 10 C 1.53186 * 109.31141 * 61.36991 * 9 8 7 11 11 N 1.46924 * 109.58742 * 291.29064 * 5 4 3 12 12 C 1.36945 * 120.63049 * 6.60228 * 11 5 4 13 13 H 1.07993 * 119.99992 * 325.68550 * 12 11 5 14 14 C 1.38814 * 119.99829 * 145.68141 * 12 11 5 15 15 N 1.31614 * 120.00055 * 351.62440 * 14 12 11 16 16 Si 1.86800 * 119.99632 * 171.62829 * 14 12 11 17 17 H 1.48502 * 109.47297 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47233 * 120.00062 * 16 14 12 19 19 H 1.48501 * 109.46772 * 239.99755 * 16 14 12 20 20 H 1.08996 * 109.47224 * 300.00283 * 1 2 3 21 21 H 1.09000 * 109.46628 * 60.00311 * 1 2 3 22 22 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00648 * 236.04604 * 2 1 3 24 24 H 1.09001 * 109.47476 * 60.00019 * 3 2 1 25 25 H 1.09000 * 109.47320 * 299.99911 * 3 2 1 26 26 H 1.09000 * 109.47102 * 62.97611 * 4 3 2 27 27 H 1.08995 * 109.46988 * 302.97688 * 4 3 2 28 28 H 1.09004 * 109.49620 * 54.47223 * 7 5 4 29 29 H 1.08998 * 109.50253 * 294.37489 * 7 5 4 30 30 H 1.08995 * 109.45895 * 58.65741 * 8 7 5 31 31 H 1.09000 * 109.45651 * 178.61687 * 8 7 5 32 32 H 1.09006 * 109.49533 * 181.31911 * 9 8 7 33 33 H 1.09002 * 109.50006 * 301.37693 * 9 8 7 34 34 H 1.08996 * 109.59030 * 65.14895 * 10 9 8 35 35 H 1.09005 * 109.58334 * 185.43402 * 10 9 8 36 36 H 0.97006 * 119.99762 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5250 1.3307 0.0006 5 6 4.0732 2.7571 0.0755 6 1 3.6089 3.2860 0.9079 7 6 5.5911 2.7140 0.2772 8 6 6.1510 4.1368 0.2119 9 6 5.8636 4.7372 -1.1662 10 6 4.3488 4.8033 -1.3841 11 7 3.7828 3.4629 -1.1799 12 6 2.9994 2.8825 -2.1416 13 1 3.0349 1.8140 -2.2946 14 6 2.1596 3.6676 -2.9196 15 7 1.9908 4.9398 -2.6279 16 14 1.2690 2.9182 -4.3807 17 1 1.6252 1.4809 -4.4936 18 1 -0.1975 3.0505 -4.1876 19 1 1.6708 3.6273 -5.6221 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8307 -0.5261 -0.7813 24 1 1.6460 1.8949 0.8900 25 1 1.6460 1.8948 -0.8900 26 1 3.8761 0.8541 -0.9146 27 1 3.8728 0.7620 0.8629 28 1 6.0452 2.1080 -0.5069 29 1 5.8166 2.2785 1.2506 30 1 5.6783 4.7485 0.9803 31 1 7.2277 4.1113 0.3796 32 1 6.2831 5.7419 -1.2199 33 1 6.3157 4.1126 -1.9366 34 1 3.9070 5.4990 -0.6708 35 1 4.1401 5.1396 -2.3997 36 1 1.4042 5.4885 -3.1718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069731077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = 7.424936 kcal Electronic energy + Delta-G solvation = -15235.702866 eV Core-core repulsion = 12947.711910 eV Total energy + Delta-G solvation = -2287.990956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.99368 -35.50215 -33.06653 -31.99488 -29.84060 -27.90630 -25.45346 -24.09633 -22.06535 -21.53661 -20.09053 -18.99788 -16.40857 -15.73521 -14.93657 -14.13105 -14.00792 -13.76692 -13.37163 -13.09613 -12.72524 -12.52466 -12.16200 -11.97054 -11.49824 -11.00800 -10.96660 -10.77441 -10.66626 -10.30950 -10.22899 -10.16819 -9.91680 -9.86128 -9.36648 -9.17761 -8.49688 -7.79721 -6.48023 -5.77563 -3.25783 3.31747 3.40119 3.41035 4.45307 4.83675 5.36445 5.41148 5.61401 5.72704 5.77461 5.79988 5.91078 5.99154 6.16703 6.20886 6.29793 6.36234 6.50108 6.51371 6.63240 6.67801 6.75732 6.86430 6.92161 6.95640 7.18384 7.24542 7.47326 7.63072 7.74783 7.79490 7.90464 8.50539 9.24227 9.86368 10.47715 11.29379 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.015572 C = 0.009571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.081116 B = 1797.693922 C = 2924.705554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.702 5.702 3 C 0.044 3.956 4 C -0.099 4.099 5 C 0.174 3.826 6 H 0.024 0.976 7 C -0.128 4.128 8 C -0.109 4.109 9 C -0.143 4.143 10 C 0.174 3.826 11 N -0.588 5.588 12 C -0.240 4.240 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.901 5.901 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.288 1.288 20 H 0.058 0.942 21 H 0.021 0.979 22 H 0.056 0.944 23 H 0.334 0.666 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.016 0.984 35 H 0.083 0.917 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -4.628 3.906 6.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.332 5.332 3 C -0.084 4.084 4 C -0.137 4.137 5 C 0.067 3.933 6 H 0.042 0.958 7 C -0.168 4.168 8 C -0.147 4.147 9 C -0.183 4.183 10 C 0.048 3.952 11 N -0.311 5.311 12 C -0.370 4.370 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.545 5.545 16 Si 0.723 3.277 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 H 0.077 0.923 21 H 0.039 0.961 22 H 0.075 0.925 23 H 0.150 0.850 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.694 -4.574 4.510 6.966 hybrid contribution -0.714 0.045 -1.672 1.818 sum 1.981 -4.529 2.839 5.700 Atomic orbital electron populations 1.22102 0.89041 1.00534 1.00335 1.60564 1.06909 1.16503 1.49223 1.22440 0.95078 0.87807 1.03080 1.21456 0.94965 0.96639 1.00604 1.20451 0.91466 0.91719 0.89707 0.95848 1.22018 0.98646 0.96387 0.99724 1.21385 0.98403 0.96786 0.98080 1.22197 1.01358 0.98570 0.96143 1.20726 0.86705 0.86296 1.01462 1.44032 1.56863 1.16189 1.14043 1.19047 1.15051 0.92500 1.10423 0.91722 1.25216 0.97658 0.96357 1.00173 1.69973 1.39463 1.05713 1.39355 0.86367 0.79554 0.78739 0.83063 1.20270 1.21723 1.21510 0.92298 0.96076 0.92479 0.84994 0.92847 0.89819 0.92088 0.93047 0.92550 0.93455 0.93021 0.94040 0.93714 0.92981 0.96588 0.89922 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.70 60.06 0.64 1.11 16 2 N -0.70 -12.16 6.86 -121.13 -0.83 -12.99 16 3 C 0.04 0.87 5.22 -3.82 -0.02 0.85 16 4 C -0.10 -1.90 4.47 -26.73 -0.12 -2.02 16 5 C 0.17 3.64 2.90 -67.60 -0.20 3.44 16 6 H 0.02 0.53 8.13 -51.93 -0.42 0.10 16 7 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 8 C -0.11 -1.93 5.88 -26.69 -0.16 -2.09 16 9 C -0.14 -2.82 6.08 -26.61 -0.16 -2.99 16 10 C 0.17 4.16 5.22 -3.71 -0.02 4.14 16 11 N -0.59 -14.30 2.97 -164.78 -0.49 -14.79 16 12 C -0.24 -6.23 6.26 -15.05 -0.09 -6.32 16 13 H 0.07 1.66 5.76 -52.49 -0.30 1.36 16 14 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 15 N -0.90 -25.64 11.15 55.49 0.62 -25.02 16 16 Si 0.89 21.27 29.56 -169.99 -5.03 16.24 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.33 5.49 8.82 -39.29 -0.35 5.14 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.96 5.19 -51.93 -0.27 1.69 16 26 H 0.06 1.22 6.86 -51.93 -0.36 0.87 16 27 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 2.20 6.27 -51.93 -0.33 1.88 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 276.08 15.07 4.16 4.16 Total: -1.00 -27.54 276.08 -8.15 -35.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.23 Total: 3.01 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -0.36 Total: -6.30 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.70 Total: -52.80 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.54 -8.15 -35.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.115 kcal (2) G-P(sol) polarization free energy of solvation -27.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds