Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99924 * 2 1 4 4 C 1.53006 * 109.47104 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47217 * 182.97503 * 4 3 2 6 6 H 1.08999 * 109.69937 * 51.64487 * 5 4 3 7 7 C 1.53188 * 109.58733 * 171.99895 * 5 4 3 8 8 C 1.53039 * 109.31116 * 174.42121 * 7 5 4 9 9 C 1.53042 * 109.53788 * 298.63573 * 8 7 5 10 10 C 1.53186 * 109.31141 * 61.36991 * 9 8 7 11 11 N 1.46924 * 109.58742 * 291.29064 * 5 4 3 12 12 C 1.36945 * 120.63049 * 6.60228 * 11 5 4 13 13 H 1.07993 * 119.99992 * 325.68550 * 12 11 5 14 14 C 1.38814 * 119.99829 * 145.68141 * 12 11 5 15 15 N 1.31614 * 120.00055 * 351.62440 * 14 12 11 16 16 Si 1.86800 * 119.99632 * 171.62829 * 14 12 11 17 17 H 1.48502 * 109.47297 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47233 * 120.00062 * 16 14 12 19 19 H 1.48501 * 109.46772 * 239.99755 * 16 14 12 20 20 H 1.08996 * 109.47224 * 300.00283 * 1 2 3 21 21 H 1.09000 * 109.46628 * 60.00311 * 1 2 3 22 22 H 1.09000 * 109.47118 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00648 * 236.04604 * 2 1 3 24 24 H 1.09001 * 109.47476 * 60.00019 * 3 2 1 25 25 H 1.09000 * 109.47320 * 299.99911 * 3 2 1 26 26 H 1.09000 * 109.47102 * 62.97611 * 4 3 2 27 27 H 1.08995 * 109.46988 * 302.97688 * 4 3 2 28 28 H 1.09004 * 109.49620 * 54.47223 * 7 5 4 29 29 H 1.08998 * 109.50253 * 294.37489 * 7 5 4 30 30 H 1.08995 * 109.45895 * 58.65741 * 8 7 5 31 31 H 1.09000 * 109.45651 * 178.61687 * 8 7 5 32 32 H 1.09006 * 109.49533 * 181.31911 * 9 8 7 33 33 H 1.09002 * 109.50006 * 301.37693 * 9 8 7 34 34 H 1.08996 * 109.59030 * 65.14895 * 10 9 8 35 35 H 1.09005 * 109.58334 * 185.43402 * 10 9 8 36 36 H 0.97006 * 119.99762 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5250 1.3307 0.0006 5 6 4.0732 2.7571 0.0755 6 1 3.6089 3.2860 0.9079 7 6 5.5911 2.7140 0.2772 8 6 6.1510 4.1368 0.2119 9 6 5.8636 4.7372 -1.1662 10 6 4.3488 4.8033 -1.3841 11 7 3.7828 3.4629 -1.1799 12 6 2.9994 2.8825 -2.1416 13 1 3.0349 1.8140 -2.2946 14 6 2.1596 3.6676 -2.9196 15 7 1.9908 4.9398 -2.6279 16 14 1.2690 2.9182 -4.3807 17 1 1.6252 1.4809 -4.4936 18 1 -0.1975 3.0505 -4.1876 19 1 1.6708 3.6273 -5.6221 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8307 -0.5261 -0.7813 24 1 1.6460 1.8949 0.8900 25 1 1.6460 1.8948 -0.8900 26 1 3.8761 0.8541 -0.9146 27 1 3.8728 0.7620 0.8629 28 1 6.0452 2.1080 -0.5069 29 1 5.8166 2.2785 1.2506 30 1 5.6783 4.7485 0.9803 31 1 7.2277 4.1113 0.3796 32 1 6.2831 5.7419 -1.2199 33 1 6.3157 4.1126 -1.9366 34 1 3.9070 5.4990 -0.6708 35 1 4.1401 5.1396 -2.3997 36 1 1.4042 5.4885 -3.1718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069731077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -10.335241 kcal Electronic energy + Delta-G solvation = -15236.473005 eV Core-core repulsion = 12947.711910 eV Total energy + Delta-G solvation = -2288.761095 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69009 -36.99066 -34.91946 -33.60795 -31.70848 -29.46112 -27.32632 -25.56625 -23.82249 -23.12603 -21.73255 -20.68976 -18.33053 -17.45957 -16.51934 -15.90177 -15.70540 -15.29816 -14.94018 -14.61614 -14.47339 -14.11440 -13.85953 -13.55694 -12.98489 -12.86762 -12.65140 -12.45570 -12.39171 -12.03584 -11.97390 -11.84347 -11.54480 -11.50986 -11.06914 -10.83486 -10.49283 -9.31964 -8.45070 -7.80691 -5.31109 1.40064 1.43371 1.50966 2.49037 3.33311 3.41442 3.67336 4.13160 4.23358 4.28282 4.36176 4.52531 4.53920 4.67379 4.71312 4.79551 4.88878 4.96354 4.99029 5.04138 5.12886 5.23234 5.28471 5.35741 5.43114 5.53723 5.55729 5.63200 5.74789 5.85496 6.13104 6.48119 6.52604 7.21834 7.92407 8.47955 9.24431 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.015572 C = 0.009571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.081116 B = 1797.693922 C = 2924.705554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.696 5.696 3 C 0.055 3.945 4 C -0.089 4.089 5 C 0.166 3.834 6 H 0.009 0.991 7 C -0.121 4.121 8 C -0.106 4.106 9 C -0.133 4.133 10 C 0.178 3.822 11 N -0.603 5.603 12 C -0.226 4.226 13 H 0.069 0.931 14 C -0.050 4.050 15 N -0.937 5.937 16 Si 0.948 3.052 17 H -0.264 1.264 18 H -0.297 1.297 19 H -0.294 1.294 20 H 0.059 0.941 21 H 0.007 0.993 22 H 0.087 0.913 23 H 0.341 0.659 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.049 0.951 34 H -0.010 1.010 35 H 0.048 0.952 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -6.414 4.743 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C -0.074 4.074 4 C -0.127 4.127 5 C 0.060 3.940 6 H 0.027 0.973 7 C -0.160 4.160 8 C -0.143 4.143 9 C -0.173 4.173 10 C 0.052 3.948 11 N -0.327 5.327 12 C -0.357 4.357 13 H 0.087 0.913 14 C -0.245 4.245 15 N -0.584 5.584 16 Si 0.777 3.223 17 H -0.188 1.188 18 H -0.224 1.224 19 H -0.221 1.221 20 H 0.078 0.922 21 H 0.025 0.975 22 H 0.105 0.895 23 H 0.158 0.842 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.066 0.934 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.933 -6.396 5.359 9.225 hybrid contribution -1.107 0.574 -1.861 2.240 sum 2.826 -5.822 3.498 7.357 Atomic orbital electron populations 1.22193 0.87869 1.02328 0.99741 1.60562 1.08009 1.14594 1.49466 1.22166 0.95736 0.88886 1.00636 1.21378 0.94235 0.95755 1.01306 1.20671 0.93838 0.92007 0.87525 0.97338 1.21936 0.95809 0.96960 1.01321 1.21380 1.00476 0.96174 0.96305 1.22039 0.97562 0.99973 0.97679 1.20543 0.89767 0.85832 0.98679 1.44303 1.56864 1.16317 1.15201 1.19265 1.13893 0.92564 1.09975 0.91336 1.25836 0.99050 0.96757 1.02836 1.70133 1.40766 1.06935 1.40574 0.85477 0.77978 0.78639 0.80160 1.18797 1.22449 1.22071 0.92166 0.97455 0.89475 0.84224 0.93853 0.93648 0.92674 0.90563 0.92640 0.90457 0.93125 0.90703 0.91903 0.93244 0.99148 0.93356 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.70 127.69 1.37 2.20 16 2 N -0.70 -22.82 6.86 -537.13 -3.68 -26.50 16 3 C 0.05 2.14 5.22 86.30 0.45 2.59 16 4 C -0.09 -3.27 4.47 30.60 0.14 -3.13 16 5 C 0.17 6.75 2.90 44.97 0.13 6.88 16 6 H 0.01 0.39 8.13 -2.39 -0.02 0.37 16 7 C -0.12 -4.03 5.36 30.67 0.16 -3.87 16 8 C -0.11 -3.43 5.88 30.62 0.18 -3.25 16 9 C -0.13 -5.07 6.08 30.67 0.19 -4.88 16 10 C 0.18 8.67 5.22 86.36 0.45 9.12 16 11 N -0.60 -29.49 2.97 -675.25 -2.01 -31.50 16 12 C -0.23 -11.84 6.26 84.03 0.53 -11.31 16 13 H 0.07 3.49 5.76 -2.91 -0.02 3.48 16 14 C -0.05 -2.74 5.08 84.86 0.43 -2.31 16 15 N -0.94 -55.43 11.15 21.65 0.24 -55.19 16 16 Si 0.95 44.57 29.56 68.60 2.03 46.60 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 22 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.34 10.47 8.82 -89.70 -0.79 9.68 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.05 2.15 5.19 -2.39 -0.01 2.13 16 26 H 0.05 2.10 6.86 -2.39 -0.02 2.08 16 27 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 28 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 35 H 0.05 2.67 6.27 -2.38 -0.01 2.65 16 36 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -60.01 276.08 0.85 -59.16 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.25 Total: 15.40 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.02 Total: -7.96 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -5.45 Total: -113.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -60.01 0.85 -59.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069731077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.824 kcal (2) G-P(sol) polarization free energy of solvation -60.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds