Wall clock time and date at job start Mon Mar 30 2020 02:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 111.00042 * 2 1 4 4 C 1.50693 * 109.47251 * 293.95610 * 3 2 1 5 5 H 1.08000 * 120.00389 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99794 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00165 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99785 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47059 * 90.00599 * 8 6 4 10 10 H 1.48504 * 109.47117 * 209.99992 * 8 6 4 11 11 H 1.48498 * 109.47286 * 330.00493 * 8 6 4 12 12 C 1.46901 * 110.99985 * 123.95538 * 2 1 3 13 13 C 1.53007 * 109.46796 * 164.13421 * 12 2 1 14 14 H 1.09000 * 110.28547 * 52.81903 * 13 12 2 15 15 C 1.54257 * 110.32054 * 174.94774 * 13 12 2 16 16 C 1.54380 * 105.06261 * 118.89550 * 15 13 12 17 17 N 1.48558 * 104.59204 * 23.85145 * 16 15 13 18 18 C 1.46897 * 110.99863 * 200.95961 * 17 16 15 19 19 C 1.48721 * 104.28912 * 320.57229 * 17 16 15 20 20 H 1.08997 * 109.47017 * 65.28696 * 1 2 3 21 21 H 1.08998 * 109.46664 * 185.29063 * 1 2 3 22 22 H 1.09003 * 109.46571 * 305.28644 * 1 2 3 23 23 H 1.09007 * 109.46474 * 53.95662 * 3 2 1 24 24 H 1.09000 * 109.47283 * 173.95123 * 3 2 1 25 25 H 0.97006 * 120.00270 * 179.97438 * 7 6 4 26 26 H 1.08998 * 109.47448 * 284.13373 * 12 2 1 27 27 H 1.08999 * 109.46952 * 44.14073 * 12 2 1 28 28 H 1.09003 * 110.32281 * 237.79017 * 15 13 12 29 29 H 1.09003 * 110.32524 * 359.97438 * 15 13 12 30 30 H 1.08998 * 110.40880 * 142.62471 * 16 15 13 31 31 H 1.08992 * 110.41172 * 265.06992 * 16 15 13 32 32 H 1.08998 * 109.47682 * 60.12440 * 18 17 16 33 33 H 1.09002 * 109.47380 * 180.12630 * 18 17 16 34 34 H 1.08998 * 109.47316 * 300.12605 * 18 17 16 35 35 H 1.08998 * 110.38824 * 280.64306 * 19 17 16 36 36 H 1.09002 * 110.50813 * 158.14563 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0747 1.5114 -2.0488 6 6 2.0269 3.3495 -1.5283 7 7 2.7112 4.0022 -0.6144 8 14 1.5830 4.1869 -3.1381 9 1 0.2704 4.8669 -2.9969 10 1 2.6252 5.1885 -3.4788 11 1 1.5006 3.1712 -4.2182 12 6 1.9955 -0.7660 1.1376 13 6 3.4737 -1.0813 0.8997 14 1 4.0229 -0.1679 0.6710 15 6 4.0794 -1.7751 2.1372 16 6 4.5469 -3.1575 1.6335 17 7 4.7536 -2.9737 0.1739 18 6 4.7148 -4.2626 -0.5297 19 6 3.6263 -2.1008 -0.2494 20 1 -0.3633 0.4296 -0.9335 21 1 -0.3632 -1.0233 0.0948 22 1 -0.3632 0.5937 0.8389 23 1 1.5611 1.9273 0.8310 24 1 3.0798 1.3444 0.1083 25 1 2.9858 4.9184 -0.7763 26 1 1.8914 -0.1791 2.0502 27 1 1.4372 -1.6967 1.2384 28 1 4.9270 -1.2032 2.5148 29 1 3.3237 -1.8906 2.9142 30 1 5.4815 -3.4420 2.1169 31 1 3.7788 -3.9086 1.8171 32 1 3.7443 -4.7333 -0.3725 33 1 4.8710 -4.0994 -1.5960 34 1 5.5002 -4.9117 -0.1426 35 1 2.7140 -2.6866 -0.3617 36 1 3.8682 -1.5898 -1.1814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070822022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:18 Heat of formation + Delta-G solvation = 4.255995 kcal Electronic energy + Delta-G solvation = -14615.982852 eV Core-core repulsion = 12327.854480 eV Total energy + Delta-G solvation = -2288.128372 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.89779 -36.28392 -32.75543 -31.94889 -29.00187 -27.31739 -26.47758 -24.76205 -23.21205 -21.03965 -20.50740 -19.23272 -16.47786 -15.73009 -15.27111 -14.72452 -14.25087 -14.06311 -13.79817 -13.40961 -13.11455 -12.65552 -11.97863 -11.81353 -11.62682 -11.35524 -11.24455 -11.19630 -10.95675 -10.70733 -10.59816 -10.49951 -10.32569 -10.04065 -9.63549 -9.12732 -8.39381 -8.30574 -7.19413 -5.99359 -4.00214 3.33715 3.39971 3.44433 4.25494 4.45297 4.83819 4.94518 5.12465 5.31379 5.36441 5.48980 5.53996 5.58339 5.73355 5.87256 5.90637 6.04043 6.06532 6.07900 6.12498 6.25289 6.29089 6.42881 6.57352 6.74149 6.79641 7.06193 7.21929 7.34717 7.38224 7.84177 8.14186 8.24353 8.59500 9.07483 9.63792 11.11648 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038109 B = 0.007124 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.563223 B = 3929.509331 C = 4062.116923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.542 5.542 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.065 3.935 13 C -0.086 4.086 14 H 0.088 0.912 15 C -0.121 4.121 16 C 0.033 3.967 17 N -0.523 5.523 18 C 0.016 3.984 19 C 0.055 3.945 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.012 0.988 23 H -0.011 1.011 24 H 0.034 0.966 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -12.934 3.812 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.266 5.266 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.064 4.064 13 C -0.106 4.106 14 H 0.107 0.893 15 C -0.160 4.160 16 C -0.095 4.095 17 N -0.247 5.247 18 C -0.133 4.133 19 C -0.073 4.073 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.006 0.994 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.915 -12.760 3.275 13.312 hybrid contribution -1.272 0.573 0.085 1.398 sum 0.642 -12.187 3.360 12.658 Atomic orbital electron populations 1.22167 0.88997 0.98498 1.01100 1.62114 1.06607 1.18022 1.39864 1.19786 0.95677 0.81492 0.96411 1.21170 1.34662 0.96867 1.01755 0.91964 1.24986 0.95342 0.97387 0.96923 1.69958 1.38469 1.11388 1.34076 0.86522 0.77943 0.79241 0.83853 1.20820 1.21263 1.19795 1.22123 0.94302 0.97151 0.92870 1.21894 0.96091 0.99111 0.93476 0.89350 1.22362 1.00416 0.95348 0.97830 1.23081 0.99733 0.97034 0.89614 1.65409 1.43296 1.12631 1.03341 1.22457 0.99781 0.91219 0.99839 1.23056 0.91018 0.93825 0.99360 0.91061 0.94042 0.96967 0.99368 0.94822 0.92973 0.95698 0.92686 0.91140 0.91601 0.90720 0.94355 0.95723 0.91335 0.91877 0.93917 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.32 60.07 0.56 1.37 16 2 N -0.54 -11.77 4.57 -244.36 -1.12 -12.88 16 3 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16 4 C -0.51 -14.34 8.58 -34.44 -0.30 -14.63 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.37 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.06 1.17 4.09 -3.82 -0.02 1.16 16 13 C -0.09 -1.48 3.10 -89.24 -0.28 -1.76 16 14 H 0.09 1.78 6.45 -51.93 -0.33 1.45 16 15 C -0.12 -1.69 6.65 -25.35 -0.17 -1.86 16 16 C 0.03 0.43 6.50 -2.18 -0.01 0.42 16 17 N -0.52 -7.71 5.66 -238.10 -1.35 -9.06 16 18 C 0.02 0.19 9.53 60.06 0.57 0.77 16 19 C 0.05 0.90 5.92 -2.09 -0.01 0.89 16 20 H 0.07 1.48 7.02 -51.93 -0.36 1.11 16 21 H 0.04 0.69 7.88 -51.93 -0.41 0.28 16 22 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 23 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 24 H 0.03 0.94 6.33 -51.93 -0.33 0.61 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.46 8.05 -51.93 -0.42 0.05 16 27 H 0.05 0.90 7.66 -51.93 -0.40 0.50 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.46 7.97 -51.93 -0.41 0.05 16 32 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.69 7.51 -51.93 -0.39 0.30 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -29.83 284.91 -8.56 -38.38 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.33 Total: -4.13 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 0.23 Total: -7.18 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -1.73 Total: -48.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.83 -8.56 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.640 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds