Wall clock time and date at job start Mon Mar 30 2020 02:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 111.00049 * 2 1 4 4 C 1.50700 * 109.46906 * 293.95733 * 3 2 1 5 5 H 1.07999 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99882 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00012 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99796 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47192 * 90.00213 * 8 6 4 10 10 H 1.48497 * 109.46695 * 209.99851 * 8 6 4 11 11 H 1.48495 * 109.47360 * 329.99664 * 8 6 4 12 12 C 1.46897 * 111.00465 * 123.95552 * 2 1 3 13 13 C 1.53001 * 109.47162 * 66.04124 * 12 2 1 14 14 H 1.08997 * 110.28913 * 307.12864 * 13 12 2 15 15 C 1.54257 * 110.32544 * 185.00270 * 13 12 2 16 16 C 1.54379 * 105.06256 * 241.00495 * 15 13 12 17 17 N 1.48562 * 104.69842 * 336.08765 * 16 15 13 18 18 C 1.46894 * 111.00344 * 159.09785 * 17 16 15 19 19 C 1.48856 * 104.07618 * 39.46842 * 17 16 15 20 20 H 1.09004 * 109.47122 * 296.04615 * 1 2 3 21 21 H 1.09001 * 109.47486 * 56.04223 * 1 2 3 22 22 H 1.09001 * 109.47025 * 176.04777 * 1 2 3 23 23 H 1.08998 * 109.46772 * 53.95687 * 3 2 1 24 24 H 1.09003 * 109.46797 * 173.95797 * 3 2 1 25 25 H 0.97003 * 120.00448 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47116 * 306.04699 * 12 2 1 27 27 H 1.08991 * 109.47513 * 186.04836 * 12 2 1 28 28 H 1.08998 * 110.32238 * 122.10867 * 15 13 12 29 29 H 1.09002 * 110.32308 * 359.90413 * 15 13 12 30 30 H 1.09002 * 110.41258 * 94.92615 * 16 15 13 31 31 H 1.09002 * 110.41328 * 217.24846 * 16 15 13 32 32 H 1.09007 * 109.47069 * 59.87301 * 18 17 16 33 33 H 1.08995 * 109.47381 * 179.87413 * 18 17 16 34 34 H 1.09000 * 109.47076 * 299.87817 * 18 17 16 35 35 H 1.09003 * 110.39541 * 201.75499 * 19 17 16 36 36 H 1.08998 * 110.39292 * 79.33352 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5112 -2.0487 6 6 2.0267 3.3495 -1.5285 7 7 1.7142 3.9390 -2.6617 8 14 2.9999 4.2761 -0.2309 9 1 4.4524 4.0637 -0.4560 10 1 2.6917 5.7259 -0.3226 11 1 2.6295 3.7756 1.1171 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9703 14 1 0.5597 -2.3512 0.8047 15 6 2.0655 -3.0456 2.2139 16 6 3.0806 -4.0828 1.6875 17 7 2.7445 -4.2430 0.2493 18 6 3.8827 -4.7923 -0.4994 19 6 2.4209 -2.8622 -0.2029 20 1 -0.3633 0.4513 0.9233 21 1 -0.3634 0.5740 -0.8524 22 1 -0.3633 -1.0252 -0.0708 23 1 1.5611 1.9273 0.8309 24 1 3.0798 1.3444 0.1082 25 1 1.9881 4.8554 -2.8235 26 1 1.5612 -0.3873 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 1.2066 -3.5483 2.6585 29 1 2.5394 -2.3880 2.9427 30 1 4.0985 -3.7098 1.8008 31 1 2.9632 -5.0304 2.2132 32 1 4.1503 -5.7667 -0.0904 33 1 3.6087 -4.9015 -1.5487 34 1 4.7337 -4.1165 -0.4144 35 1 1.8053 -2.8914 -1.1020 36 1 3.3356 -2.2982 -0.3854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070822024.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:20 Heat of formation + Delta-G solvation = 8.431654 kcal Electronic energy + Delta-G solvation = -14550.888761 eV Core-core repulsion = 12262.941459 eV Total energy + Delta-G solvation = -2287.947302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05980 -36.46002 -32.88813 -31.96053 -29.23287 -27.69319 -26.64165 -25.22114 -22.95148 -21.08702 -20.26584 -19.51574 -16.88470 -15.99343 -15.30086 -14.72021 -14.45353 -14.26712 -14.01499 -13.54671 -13.00232 -12.73834 -12.36253 -11.98489 -11.82475 -11.43481 -11.39382 -11.24741 -11.05523 -10.95229 -10.73162 -10.47417 -10.40816 -10.00926 -9.76704 -9.26891 -8.56839 -8.43430 -7.34592 -6.04977 -4.02038 3.27645 3.35134 3.37128 4.13449 4.41797 4.63867 4.78235 4.97057 5.17195 5.27185 5.33854 5.44143 5.48064 5.60105 5.74178 5.85012 5.86901 5.90530 5.97927 6.07587 6.10819 6.14326 6.29818 6.38800 6.52921 6.71982 6.87749 6.91465 7.01130 7.08712 7.59962 7.91992 8.07112 8.66868 9.03918 9.56943 11.08189 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043207 B = 0.006758 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.882969 B = 4142.028770 C = 4192.251924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.531 5.531 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.060 3.940 13 C -0.087 4.087 14 H 0.080 0.920 15 C -0.121 4.121 16 C 0.032 3.968 17 N -0.523 5.523 18 C 0.015 3.985 19 C 0.051 3.949 20 H 0.010 0.990 21 H 0.079 0.921 22 H 0.050 0.950 23 H -0.013 1.013 24 H 0.022 0.978 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.083 0.917 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -13.791 8.977 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.069 4.069 13 C -0.107 4.107 14 H 0.098 0.902 15 C -0.159 4.159 16 C -0.096 4.096 17 N -0.247 5.247 18 C -0.134 4.134 19 C -0.076 4.076 20 H 0.028 0.972 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.005 0.995 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.034 -14.215 8.343 16.607 hybrid contribution 1.062 1.598 1.437 2.397 sum 3.096 -12.617 9.779 16.260 Atomic orbital electron populations 1.22284 0.88339 1.00006 1.00720 1.61919 1.07399 1.16225 1.39875 1.20181 0.94763 0.84311 0.97242 1.21046 1.35539 0.97164 1.00861 0.90083 1.24901 0.95836 0.97376 0.95262 1.69892 1.46996 1.13263 1.23838 0.86874 0.80878 0.79313 0.82762 1.20198 1.21180 1.19349 1.22218 0.99651 0.92497 0.92542 1.21911 1.00764 0.94107 0.93869 0.90163 1.22356 0.98869 0.97027 0.97683 1.23088 0.97428 0.99085 0.90029 1.65479 1.34949 1.21776 1.02503 1.22469 0.92079 0.99485 0.99391 1.23106 0.99475 0.86683 0.98383 0.97174 0.90230 0.93097 0.99493 0.96039 0.92684 0.95777 0.91688 0.91250 0.91389 0.94103 0.90672 0.91799 0.91244 0.95416 0.89821 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.15 60.06 0.55 1.22 16 2 N -0.53 -11.11 4.62 -244.37 -1.13 -12.24 16 3 C 0.16 3.96 3.79 -4.97 -0.02 3.94 16 4 C -0.51 -14.52 9.01 -34.44 -0.31 -14.83 16 5 H 0.08 2.51 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 8 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.06 1.02 4.07 -3.82 -0.02 1.01 16 13 C -0.09 -1.26 3.01 -89.24 -0.27 -1.53 16 14 H 0.08 1.19 6.31 -51.93 -0.33 0.86 16 15 C -0.12 -1.45 6.65 -25.35 -0.17 -1.62 16 16 C 0.03 0.37 6.48 -2.18 -0.01 0.36 16 17 N -0.52 -6.96 5.67 -237.97 -1.35 -8.30 16 18 C 0.01 0.17 9.54 60.06 0.57 0.74 16 19 C 0.05 0.76 5.93 -2.01 -0.01 0.75 16 20 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 21 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 22 H 0.05 0.85 6.35 -51.93 -0.33 0.52 16 23 H -0.01 -0.31 7.18 -51.93 -0.37 -0.69 16 24 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.06 1.12 7.77 -51.93 -0.40 0.71 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 30 H 0.04 0.47 7.97 -51.93 -0.41 0.05 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.31 7.98 -51.93 -0.41 -0.10 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.81 7.53 -51.93 -0.39 0.42 16 LS Contribution 281.15 15.07 4.24 4.24 Total: -1.00 -30.22 281.15 -8.22 -38.44 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.30 Total: -4.08 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 0.22 Total: -8.09 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -1.70 Total: -47.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.22 -8.22 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070822024.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.871 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds