Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99919 * 2 1 4 4 C 1.52998 * 109.47286 * 293.95871 * 3 2 1 5 5 C 1.52999 * 109.47303 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47525 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99441 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00075 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00481 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 179.73007 * 8 6 5 11 11 H 1.48494 * 109.47225 * 180.27306 * 10 8 6 12 12 H 1.48506 * 109.46866 * 300.27330 * 10 8 6 13 13 H 1.48498 * 109.47306 * 60.26614 * 10 8 6 14 14 C 1.46901 * 111.00086 * 123.95295 * 2 1 3 15 15 H 1.09004 * 110.27115 * 186.74877 * 14 2 1 16 16 C 1.54597 * 110.30863 * 64.66360 * 14 2 1 17 17 C 1.55102 * 102.84552 * 219.18633 * 16 14 2 18 18 N 1.48532 * 103.28540 * 37.29889 * 17 16 14 19 19 C 1.47902 * 105.82299 * 320.85204 * 18 17 16 20 20 H 1.08996 * 109.47083 * 59.99684 * 1 2 3 21 21 H 1.09001 * 109.46585 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47134 * 299.99409 * 1 2 3 23 23 H 1.09000 * 109.47652 * 173.95290 * 3 2 1 24 24 H 1.09007 * 109.47194 * 53.95740 * 3 2 1 25 25 H 1.08995 * 109.47540 * 59.99837 * 4 3 2 26 26 H 1.09001 * 109.46719 * 299.99637 * 4 3 2 27 27 H 1.09009 * 109.47378 * 59.99763 * 5 4 3 28 28 H 1.08998 * 109.47458 * 300.00225 * 5 4 3 29 29 H 0.97005 * 119.99656 * 359.72741 * 9 8 6 30 30 H 1.09001 * 110.71768 * 337.48222 * 16 14 2 31 31 H 1.08992 * 110.72821 * 100.76343 * 16 14 2 32 32 H 1.09003 * 110.58791 * 278.87407 * 17 16 14 33 33 H 1.08994 * 110.68444 * 155.77746 * 17 16 14 34 34 H 1.00907 * 110.99630 * 81.36218 * 18 17 16 35 35 H 1.08997 * 109.91575 * 265.97525 * 19 18 17 36 36 H 1.09000 * 109.92385 * 144.68028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1791 3.4861 -1.3179 6 6 1.8211 4.1617 -2.6166 7 1 1.2587 3.6258 -3.3669 8 6 2.2114 5.4638 -2.8468 9 7 2.8958 6.1165 -1.9329 10 14 1.7741 6.2987 -4.4596 11 1 2.3108 7.6833 -4.4617 12 1 2.3664 5.5364 -5.5881 13 1 0.2974 6.3399 -4.6112 14 6 1.9955 -0.7660 1.1376 15 1 3.0788 -0.6599 1.1953 16 6 1.6086 -2.2569 1.0057 17 6 1.2725 -2.6565 2.4662 18 7 0.6013 -1.4461 3.0054 19 6 1.3416 -0.2929 2.4490 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 3.0797 1.3445 0.1083 24 1 1.5611 1.9274 0.8310 25 1 0.5471 2.0845 -1.4264 26 1 2.0657 1.5016 -2.1491 27 1 3.2635 3.4595 -1.2095 28 1 1.7445 4.0417 -0.4870 29 1 3.1226 5.6831 -1.0952 30 1 0.7355 -2.3733 0.3636 31 1 2.4474 -2.8411 0.6276 32 1 2.1839 -2.8716 3.0241 33 1 0.5972 -3.5118 2.4857 34 1 -0.3695 -1.4188 2.7315 35 1 2.1098 0.0292 3.1519 36 1 0.6531 0.5274 2.2458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070894395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -5.687569 kcal Electronic energy + Delta-G solvation = -14355.369951 eV Core-core repulsion = 12066.810393 eV Total energy + Delta-G solvation = -2288.559557 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66579 -36.08837 -33.78690 -31.27551 -29.59201 -28.22109 -26.95410 -24.62576 -22.59216 -21.77679 -20.22992 -19.44758 -17.05150 -16.68508 -15.84812 -15.24323 -14.50679 -14.18142 -13.91341 -13.69749 -13.20097 -12.88926 -12.09673 -11.98693 -11.89873 -11.68293 -11.49477 -11.37533 -11.22074 -10.77873 -10.68543 -10.53554 -10.11171 -9.75493 -9.69817 -9.02261 -8.51329 -8.29932 -8.00861 -6.33566 -4.02103 3.45387 3.47631 3.66326 3.88890 4.22014 4.57499 4.62324 4.71675 5.03876 5.10455 5.22497 5.28613 5.40541 5.43973 5.52447 5.62418 5.71887 5.75555 5.87124 5.90729 6.04713 6.08845 6.20684 6.49833 6.57682 6.64001 6.96207 7.06684 7.25776 7.30799 7.45096 7.58017 8.25848 8.49516 8.91675 9.70200 11.07099 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.077582 B = 0.005161 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.821181 B = 5424.515230 C = 5546.997489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.532 5.532 3 C 0.054 3.946 4 C -0.097 4.097 5 C 0.009 3.991 6 C -0.600 4.600 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.914 5.914 10 Si 1.069 2.931 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.288 1.288 14 C 0.053 3.947 15 H 0.088 0.912 16 C -0.150 4.150 17 C 0.041 3.959 18 N -0.673 5.673 19 C 0.006 3.994 20 H 0.076 0.924 21 H 0.061 0.939 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.006 0.994 28 H 0.004 0.996 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.334 0.666 35 H 0.076 0.924 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.000 -15.576 7.143 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.255 5.255 3 C -0.073 4.073 4 C -0.135 4.135 5 C -0.029 4.029 6 C -0.638 4.638 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.551 5.551 10 Si 0.897 3.103 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.215 1.215 14 C -0.058 4.058 15 H 0.106 0.894 16 C -0.190 4.190 17 C -0.089 4.089 18 N -0.300 5.300 19 C -0.125 4.125 20 H 0.095 0.905 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.383 -14.380 6.545 16.157 hybrid contribution -0.666 -1.025 0.637 1.378 sum -4.049 -15.404 7.182 17.472 Atomic orbital electron populations 1.22508 0.88263 1.01151 1.01331 1.62264 1.07566 1.15070 1.40562 1.22331 0.99523 0.86388 0.99044 1.21515 1.00103 0.97437 0.94491 1.19204 0.95487 0.90880 0.97329 1.22050 1.38901 1.00356 1.02510 0.93377 1.25860 0.94379 0.94888 1.03881 1.70786 1.36534 1.39953 1.07812 0.83547 0.76064 0.76170 0.74497 1.20778 1.21437 1.21493 1.23054 1.00122 0.93594 0.89036 0.89416 1.23216 1.02572 0.95322 0.97852 1.23163 0.99644 0.93210 0.92900 1.62710 1.06030 1.02130 1.59113 1.23471 0.98838 0.94441 0.95745 0.90543 0.92016 0.95536 0.91328 0.95272 0.93302 0.92478 0.97532 0.97765 0.92184 0.90606 0.90589 0.90248 0.90797 0.85048 0.90553 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.59 60.07 0.52 0.72 16 2 N -0.53 -7.93 4.75 -233.25 -1.11 -9.03 16 3 C 0.05 0.95 4.64 -3.83 -0.02 0.93 16 4 C -0.10 -2.08 5.08 -26.73 -0.14 -2.21 16 5 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 6 C -0.60 -17.54 9.11 -34.44 -0.31 -17.85 16 7 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 8 C 0.01 0.39 5.46 -17.82 -0.10 0.30 16 9 N -0.91 -28.57 13.65 55.43 0.76 -27.81 16 10 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.05 0.66 3.04 -66.36 -0.20 0.46 16 15 H 0.09 1.13 7.95 -51.93 -0.41 0.72 16 16 C -0.15 -1.56 6.55 -24.78 -0.16 -1.72 16 17 C 0.04 0.38 7.55 -1.81 -0.01 0.36 16 18 N -0.67 -7.22 7.51 -109.99 -0.83 -8.05 16 19 C 0.01 0.08 6.27 -2.76 -0.02 0.06 16 20 H 0.08 1.12 6.47 -51.93 -0.34 0.78 16 21 H 0.06 0.71 6.14 -51.93 -0.32 0.39 16 22 H 0.03 0.35 6.05 -51.93 -0.31 0.03 16 23 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 24 H 0.03 0.51 7.38 -51.93 -0.38 0.13 16 25 H 0.05 1.03 6.55 -51.93 -0.34 0.69 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.01 0.18 8.01 -51.92 -0.42 -0.24 16 28 H 0.00 0.11 8.00 -51.93 -0.42 -0.30 16 29 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 30 H 0.08 0.81 6.07 -51.93 -0.32 0.49 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.33 3.27 8.92 -39.29 -0.35 2.92 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.95 5.16 -51.93 -0.27 0.68 16 LS Contribution 278.05 15.07 4.19 4.19 Total: -1.00 -30.94 278.05 -8.53 -39.47 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.89 Total: -0.57 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.56 Total: -18.85 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -1.18 Total: -44.89 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.94 -8.53 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.778 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds