Wall clock time and date at job start Mon Mar 30 2020 02:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99919 * 2 1 4 4 C 1.52998 * 109.47286 * 293.95871 * 3 2 1 5 5 C 1.52999 * 109.47303 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47525 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99441 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00075 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00481 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 179.73007 * 8 6 5 11 11 H 1.48494 * 109.47225 * 180.27306 * 10 8 6 12 12 H 1.48506 * 109.46866 * 300.27330 * 10 8 6 13 13 H 1.48498 * 109.47306 * 60.26614 * 10 8 6 14 14 C 1.46901 * 111.00086 * 123.95295 * 2 1 3 15 15 H 1.09004 * 110.27115 * 186.74877 * 14 2 1 16 16 C 1.54597 * 110.30863 * 64.66360 * 14 2 1 17 17 C 1.55102 * 102.84552 * 219.18633 * 16 14 2 18 18 N 1.48532 * 103.28540 * 37.29889 * 17 16 14 19 19 C 1.47902 * 105.82299 * 320.85204 * 18 17 16 20 20 H 1.08996 * 109.47083 * 59.99684 * 1 2 3 21 21 H 1.09001 * 109.46585 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47134 * 299.99409 * 1 2 3 23 23 H 1.09000 * 109.47652 * 173.95290 * 3 2 1 24 24 H 1.09007 * 109.47194 * 53.95740 * 3 2 1 25 25 H 1.08995 * 109.47540 * 59.99837 * 4 3 2 26 26 H 1.09001 * 109.46719 * 299.99637 * 4 3 2 27 27 H 1.09009 * 109.47378 * 59.99763 * 5 4 3 28 28 H 1.08998 * 109.47458 * 300.00225 * 5 4 3 29 29 H 0.97005 * 119.99656 * 359.72741 * 9 8 6 30 30 H 1.09001 * 110.71768 * 337.48222 * 16 14 2 31 31 H 1.08992 * 110.72821 * 100.76343 * 16 14 2 32 32 H 1.09003 * 110.58791 * 278.87407 * 17 16 14 33 33 H 1.08994 * 110.68444 * 155.77746 * 17 16 14 34 34 H 1.00907 * 110.99630 * 81.36218 * 18 17 16 35 35 H 1.08997 * 109.91575 * 265.97525 * 19 18 17 36 36 H 1.09000 * 109.92385 * 144.68028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1791 3.4861 -1.3179 6 6 1.8211 4.1617 -2.6166 7 1 1.2587 3.6258 -3.3669 8 6 2.2114 5.4638 -2.8468 9 7 2.8958 6.1165 -1.9329 10 14 1.7741 6.2987 -4.4596 11 1 2.3108 7.6833 -4.4617 12 1 2.3664 5.5364 -5.5881 13 1 0.2974 6.3399 -4.6112 14 6 1.9955 -0.7660 1.1376 15 1 3.0788 -0.6599 1.1953 16 6 1.6086 -2.2569 1.0057 17 6 1.2725 -2.6565 2.4662 18 7 0.6013 -1.4461 3.0054 19 6 1.3416 -0.2929 2.4490 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 3.0797 1.3445 0.1083 24 1 1.5611 1.9274 0.8310 25 1 0.5471 2.0845 -1.4264 26 1 2.0657 1.5016 -2.1491 27 1 3.2635 3.4595 -1.2095 28 1 1.7445 4.0417 -0.4870 29 1 3.1226 5.6831 -1.0952 30 1 0.7355 -2.3733 0.3636 31 1 2.4474 -2.8411 0.6276 32 1 2.1839 -2.8716 3.0241 33 1 0.5972 -3.5118 2.4857 34 1 -0.3695 -1.4188 2.7315 35 1 2.1098 0.0292 3.1519 36 1 0.6531 0.5274 2.2458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070894395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:19 Heat of formation + Delta-G solvation = -28.307891 kcal Electronic energy + Delta-G solvation = -14356.350841 eV Core-core repulsion = 12066.810393 eV Total energy + Delta-G solvation = -2289.540448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68627 -37.40810 -35.73163 -33.09465 -30.52041 -29.22917 -28.56620 -26.26356 -24.28420 -22.84520 -21.80189 -20.51799 -18.94514 -17.92541 -16.90824 -16.54571 -15.75947 -15.60252 -15.44547 -15.16313 -14.75771 -14.37459 -13.65971 -13.28899 -13.10653 -12.91169 -12.76437 -12.63471 -12.45943 -12.27494 -12.10376 -11.97748 -11.71161 -11.57808 -11.54473 -10.67367 -10.55659 -9.94467 -9.12669 -8.70955 -6.41365 1.51769 1.60567 1.80190 2.55715 2.79992 3.14189 3.31191 3.71867 3.77573 4.00221 4.08302 4.17822 4.27860 4.35291 4.43521 4.47242 4.57299 4.66620 4.72843 4.79863 4.86750 4.92933 4.96241 5.03574 5.13522 5.17893 5.40625 5.49138 5.66156 5.94952 6.03854 6.06972 6.16906 6.36652 6.56172 7.40958 8.69875 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.077582 B = 0.005161 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.821181 B = 5424.515230 C = 5546.997489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.537 5.537 3 C 0.067 3.933 4 C -0.083 4.083 5 C 0.009 3.991 6 C -0.620 4.620 7 H 0.050 0.950 8 C -0.040 4.040 9 N -0.938 5.938 10 Si 1.119 2.881 11 H -0.282 1.282 12 H -0.269 1.269 13 H -0.268 1.268 14 C 0.049 3.951 15 H 0.082 0.918 16 C -0.143 4.143 17 C 0.046 3.954 18 N -0.677 5.677 19 C 0.012 3.988 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.030 0.970 23 H 0.065 0.935 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.050 0.950 27 H -0.012 1.012 28 H -0.013 1.013 29 H 0.254 0.746 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.341 0.659 35 H 0.071 0.929 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -17.034 6.763 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.060 4.060 4 C -0.121 4.121 5 C -0.028 4.028 6 C -0.658 4.658 7 H 0.068 0.932 8 C -0.237 4.237 9 N -0.575 5.575 10 Si 0.939 3.061 11 H -0.208 1.208 12 H -0.194 1.194 13 H -0.193 1.193 14 C -0.061 4.061 15 H 0.100 0.900 16 C -0.182 4.182 17 C -0.084 4.084 18 N -0.305 5.305 19 C -0.119 4.119 20 H 0.080 0.920 21 H 0.104 0.896 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.007 0.993 28 H 0.005 0.995 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.089 0.911 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.271 -15.878 6.185 17.567 hybrid contribution -0.389 -0.621 0.806 1.089 sum -4.660 -16.498 6.991 18.514 Atomic orbital electron populations 1.22525 0.87257 1.02555 1.00781 1.62212 1.08534 1.13154 1.42125 1.22022 0.99423 0.87988 0.96617 1.21274 0.99733 0.94614 0.96441 1.19150 0.94338 0.93667 0.95671 1.22495 1.38746 1.00952 1.03573 0.93205 1.27500 0.93455 0.96077 1.06666 1.70925 1.38269 1.40307 1.08015 0.82923 0.77120 0.75239 0.70770 1.20756 1.19375 1.19309 1.23149 0.99809 0.94769 0.88396 0.89972 1.23179 1.02835 0.93433 0.98741 1.23211 1.00183 0.93164 0.91822 1.62700 1.06468 1.02146 1.59172 1.23337 0.98521 0.94705 0.95355 0.91977 0.89638 0.95173 0.91650 0.95556 0.93121 0.93153 0.99350 0.99474 0.93639 0.90525 0.89847 0.89991 0.88668 0.84297 0.91090 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.59 127.69 1.10 1.52 16 2 N -0.54 -15.43 4.75 -891.86 -4.24 -19.67 16 3 C 0.07 2.36 4.64 86.30 0.40 2.76 16 4 C -0.08 -3.55 5.08 30.59 0.16 -3.39 16 5 C 0.01 0.50 4.28 29.85 0.13 0.63 16 6 C -0.62 -36.56 9.11 25.60 0.23 -36.33 16 7 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 8 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 9 N -0.94 -59.53 13.65 21.45 0.29 -59.24 16 10 Si 1.12 51.08 29.90 68.60 2.05 53.13 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 14 C 0.05 1.15 3.04 45.79 0.14 1.29 16 15 H 0.08 2.03 7.95 -2.38 -0.02 2.01 16 16 C -0.14 -2.59 6.55 31.86 0.21 -2.38 16 17 C 0.05 0.71 7.55 86.71 0.65 1.37 16 18 N -0.68 -13.03 7.51 -501.91 -3.77 -16.80 16 19 C 0.01 0.28 6.27 86.45 0.54 0.82 16 20 H 0.06 1.75 6.47 -2.39 -0.02 1.74 16 21 H 0.09 1.76 6.14 -2.39 -0.01 1.74 16 22 H 0.03 0.75 6.05 -2.39 -0.01 0.73 16 23 H 0.06 2.32 7.95 -2.39 -0.02 2.30 16 24 H 0.03 0.93 7.38 -2.38 -0.02 0.92 16 25 H 0.05 2.14 6.55 -2.39 -0.02 2.12 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H -0.01 -0.67 8.01 -2.38 -0.02 -0.69 16 28 H -0.01 -0.74 8.00 -2.39 -0.02 -0.76 16 29 H 0.25 16.35 7.22 -92.70 -0.67 15.68 16 30 H 0.08 1.40 6.07 -2.39 -0.01 1.39 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.34 5.83 8.92 -89.69 -0.80 5.03 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.55 5.16 -2.39 -0.01 1.53 16 Total: -1.00 -66.05 278.05 -1.29 -67.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.35 Total: 10.86 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.02 Total: -35.62 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -7.71 Total: -95.71 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -66.05 -1.29 -67.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.038 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds