Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00113 * 2 1 4 4 C 1.52999 * 109.46708 * 66.04832 * 3 2 1 5 5 C 1.53004 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47542 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99889 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47294 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47264 * 119.99966 * 10 8 6 13 13 H 1.48497 * 109.47189 * 239.99847 * 10 8 6 14 14 C 1.46903 * 110.99734 * 236.04776 * 2 1 3 15 15 H 1.08999 * 110.63213 * 61.57032 * 14 2 1 16 16 C 1.55149 * 110.70387 * 184.67472 * 14 2 1 17 17 C 1.55113 * 101.55872 * 153.91047 * 16 14 2 18 18 N 1.47846 * 104.90467 * 323.15262 * 17 16 14 19 19 C 1.47453 * 108.56534 * 23.97650 * 18 17 16 20 20 H 1.08997 * 109.46865 * 178.28100 * 1 2 3 21 21 H 1.09000 * 109.47189 * 58.28373 * 1 2 3 22 22 H 1.08997 * 109.46781 * 298.28430 * 1 2 3 23 23 H 1.09002 * 109.47146 * 186.04511 * 3 2 1 24 24 H 1.09000 * 109.47407 * 306.04724 * 3 2 1 25 25 H 1.08997 * 109.47451 * 300.00004 * 4 3 2 26 26 H 1.08996 * 109.47544 * 60.00223 * 4 3 2 27 27 H 1.08997 * 109.46985 * 300.00397 * 5 4 3 28 28 H 1.09009 * 109.46822 * 59.99741 * 5 4 3 29 29 H 0.97004 * 119.99791 * 180.02562 * 9 8 6 30 30 H 1.08999 * 110.98634 * 272.13073 * 16 14 2 31 31 H 1.08996 * 110.99321 * 35.94073 * 16 14 2 32 32 H 1.09002 * 110.42238 * 204.24373 * 17 16 14 33 33 H 1.08996 * 110.31481 * 82.01152 * 17 16 14 34 34 H 1.00900 * 111.00323 * 146.24062 * 18 17 16 35 35 H 1.08994 * 109.88936 * 239.60221 * 19 18 17 36 36 H 1.08999 * 109.88565 * 118.41080 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1803 3.4855 1.3187 6 6 1.8213 4.1613 2.6169 7 1 1.2584 3.6257 3.3669 8 6 2.2124 5.4632 2.8476 9 7 2.8984 6.1153 1.9344 10 14 1.7680 6.3006 4.4570 11 1 0.9999 5.3583 5.3098 12 1 3.0098 6.7067 5.1632 13 1 0.9418 7.5025 4.1780 14 6 1.9954 -0.7660 -1.1376 15 1 1.6796 -0.3193 -2.0804 16 6 3.5424 -0.8606 -1.0664 17 6 3.8099 -2.1723 -1.8499 18 7 2.6914 -3.0678 -1.4855 19 6 1.5487 -2.2408 -1.0559 20 1 -0.3633 -1.0272 -0.0308 21 1 -0.3633 0.5403 -0.8742 22 1 -0.3633 0.4869 0.9050 23 1 3.0798 1.3443 -0.1082 24 1 1.5612 1.9274 -0.8309 25 1 0.5473 2.0843 1.4266 26 1 2.0658 1.5014 2.1492 27 1 3.2646 3.4581 1.2106 28 1 1.7463 4.0417 0.4877 29 1 3.1739 7.0311 2.0969 30 1 4.0087 -0.0068 -1.5580 31 1 3.8811 -0.9477 -0.0341 32 1 4.7608 -2.6099 -1.5457 33 1 3.8075 -1.9795 -2.9227 34 1 2.4366 -3.6619 -2.2603 35 1 1.2759 -2.4893 -0.0303 36 1 0.6998 -2.4083 -1.7188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070894402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = -7.076938 kcal Electronic energy + Delta-G solvation = -14229.574260 eV Core-core repulsion = 11940.954455 eV Total energy + Delta-G solvation = -2288.619805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13505 -36.18863 -33.51597 -31.33161 -29.87781 -28.23277 -26.90161 -24.80343 -22.30366 -21.22925 -19.98426 -19.77437 -16.84363 -16.41166 -16.04140 -14.77564 -14.42435 -14.19415 -13.79365 -13.66201 -12.99311 -12.62916 -12.43976 -12.24705 -11.86236 -11.67957 -11.26610 -11.10990 -10.93254 -10.89070 -10.73376 -10.46302 -10.42301 -9.58177 -9.30662 -9.02356 -8.57615 -8.32260 -8.07476 -5.97474 -3.99262 3.32969 3.40290 3.45050 3.99003 4.24398 4.49184 4.56338 4.81155 5.09522 5.20819 5.31590 5.38533 5.49883 5.51429 5.62572 5.78689 5.82162 5.90209 5.97819 6.03179 6.13621 6.21700 6.35520 6.71106 6.72753 6.81325 7.14888 7.20112 7.37639 7.41613 7.71501 7.86288 8.03291 8.46968 9.08229 9.64742 11.14095 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062257 B = 0.005271 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.637066 B = 5310.961996 C = 5542.270618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.055 3.945 4 C -0.104 4.104 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C 0.060 3.940 15 H 0.041 0.959 16 C -0.122 4.122 17 C 0.046 3.954 18 N -0.683 5.683 19 C 0.055 3.945 20 H 0.061 0.939 21 H 0.021 0.979 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.015 0.985 28 H 0.013 0.987 29 H 0.259 0.741 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.335 0.665 35 H 0.087 0.913 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 -14.796 -8.207 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.255 5.255 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.050 4.050 15 H 0.059 0.941 16 C -0.161 4.161 17 C -0.083 4.083 18 N -0.312 5.312 19 C -0.075 4.075 20 H 0.080 0.920 21 H 0.039 0.961 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.150 0.850 35 H 0.106 0.894 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.202 -15.011 -7.154 16.672 hybrid contribution -0.827 1.417 -0.849 1.847 sum -2.029 -13.594 -8.003 15.905 Atomic orbital electron populations 1.22425 0.87819 1.01070 1.01328 1.62167 1.07567 1.15164 1.40604 1.22340 0.99767 0.85998 0.99120 1.21645 1.00055 0.98146 0.94382 1.19080 0.96219 0.89355 0.96971 1.21294 1.34551 0.97586 1.02069 0.92615 1.25029 0.95251 0.97520 0.96741 1.69982 1.38472 1.11256 1.33976 0.86544 0.78176 0.79450 0.83891 1.19706 1.21018 1.21077 1.22865 0.95505 0.94117 0.92479 0.94075 1.22817 0.94523 0.96582 1.02147 1.22845 0.95429 0.92620 0.97442 1.61873 1.07142 1.21472 1.40699 1.22664 0.91992 0.90898 1.01920 0.91999 0.96087 0.90497 0.91069 0.95525 0.93459 0.92569 0.96628 0.96908 0.93127 0.90849 0.89308 0.90213 0.94210 0.84951 0.89448 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.11 60.07 0.55 0.85 16 2 N -0.53 -8.20 4.59 -232.69 -1.07 -9.27 16 3 C 0.05 0.98 4.83 -3.83 -0.02 0.96 16 4 C -0.10 -2.22 5.08 -26.73 -0.14 -2.36 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 7 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 10 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.06 0.79 2.63 -65.89 -0.17 0.62 16 15 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.12 -1.54 5.40 -24.48 -0.13 -1.67 16 17 C 0.05 0.48 7.58 -2.19 -0.02 0.46 16 18 N -0.68 -7.40 7.39 -110.67 -0.82 -8.22 16 19 C 0.05 0.63 6.07 -2.83 -0.02 0.62 16 20 H 0.06 0.73 6.82 -51.93 -0.35 0.38 16 21 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 22 H 0.08 1.13 6.55 -51.93 -0.34 0.79 16 23 H 0.07 1.27 6.68 -51.93 -0.35 0.92 16 24 H 0.03 0.48 8.11 -51.93 -0.42 0.06 16 25 H 0.05 0.99 6.59 -51.93 -0.34 0.65 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 2.90 8.91 -39.29 -0.35 2.55 16 35 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 284.89 15.07 4.29 4.29 Total: -1.00 -30.48 284.89 -8.68 -39.16 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.31 Total: -2.49 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.50 Total: -13.81 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -1.15 Total: -44.08 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.48 -8.68 -39.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.083 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds